Detection and molecular characterization of African swine fever virus recovered from Ornithodoros ticks of the Serengeti Ecosystem, Tanzania.

Baraka M Mbega1,2,3 Jean N Hakizimana4 Ester K Adamson4 Mariam R Makange4,5 Julius Keyyu6 Hans J Nauwynck7 Gerald Misinzo8,9
Affiliations 9 institutions
  1. SACIDS Africa Centre of Excellence for Infectious Diseases, SACIDS Foundation for One Health, Sokoine University of Agriculture, P.O. Box 3297, Morogoro, Tanzania. [email protected].
  2. Department of Microbiology, Parasitology and Biotechnology, College of Veterinary Medicine and Biomedical Sciences, Sokoine University of Agriculture, P.O. Box 3019, Morogoro, Tanzania. [email protected].
  3. Department of Biology, St. John's University of Tanzania, P.O. Box 47, Dodoma, Tanzania. [email protected].
  4. SACIDS Africa Centre of Excellence for Infectious Diseases, SACIDS Foundation for One Health, Sokoine University of Agriculture, P.O. Box 3297, Morogoro, Tanzania.
  5. Department of Microbiology, Parasitology and Biotechnology, College of Veterinary Medicine and Biomedical Sciences, Sokoine University of Agriculture, P.O. Box 3019, Morogoro, Tanzania.
  6. Tanzania Wildlife Research Institute, P.O. Box 661, Arusha, Tanzania.
  7. Laboratory of Virology, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, Merelbeke, 9820, Belgium.
  8. SACIDS Africa Centre of Excellence for Infectious Diseases, SACIDS Foundation for One Health, Sokoine University of Agriculture, P.O. Box 3297, Morogoro, Tanzania. [email protected].
  9. Department of Microbiology, Parasitology and Biotechnology, College of Veterinary Medicine and Biomedical Sciences, Sokoine University of Agriculture, P.O. Box 3019, Morogoro, Tanzania. [email protected].

Abstract

African swine fever (ASF) is a highly lethal hemorrhagic disease of domestic pigs and Eurasian wild boars, caused by ASF virus (ASFV). In Africa, ASFV is maintained in a sylvatic cycle involving wild suids, primarily warthogs (Phacocherus africanus) and Ornithodoros ticks. Despite ASF outbreaks in Tanzania, the role of the sylvatic cycle in areas with high wildlife-livestock interactions remains understudied. This study aimed to detect and characterize ASFV in Ornithodoros ticks from warthog burrows in the Serengeti ecosystem. Soft ticks were collected from warthog burrows and screened for ASFV using quantitative polymerase chain reaction (qPCR). A total of 1,003 Ornithodoros ticks were collected from 25 burrows and qPCR detected ASFV in ticks from 9 burrows. Conventional PCR targeting the ASFV B646L (p72) gene, intergenic region (IGR) between I73R and I329L genes, and the central variable region (CVR) of the B602L gene was conducted in positive samples. The amplicons were sequenced and used for phylogenetic analysis. Phylogenetic analysis of the nucleotide sequences of B646L (p72) gene showed that the identified ASFV strains clustered within genotype X, which has been previously associated with outbreaks in domestic pigs in Tanzania and neighboring countries. Analysis of the IGR and the CVR of the B602L gene confirmed the high genetic similarity between the detected strains and those linked to previous ASF outbreaks in Tanzania and neighboring countries. The findings of this study highlight the need to prevent virus spillover from the sylvatic cycle for efficient control of the ASF in Tanzania.

Supporting text Virus Host Location
African swine fever virus 3 Ornithodoros 3 Phylogenetic analysis 66 Serengeti ecosystem 1 Ticks 14 Warthog burrows 1 African Swine Fever 3 African Swine Fever Virus 3 Ornithodoros 3 Animals 1948 Ecosystem 36 Phylogeny 805 Polymerase Chain Reaction 38 Swine 258 Tanzania 3

Evidence records

3 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE11732
Key finding

ASFV was detected by qPCR in Ornithodoros ticks collected from warthog burrows in the Serengeti ecosystem, with positives from 9 of 25 burrows (1,003 ticks sampled).

Virus
Host
Natural host
Location
Supporting text

This study aimed to detect and characterize ASFV in Ornithodoros ticks from warthog burrows in the Serengeti ecosystem. Soft ticks were collected from warthog burrows and screened for ASFV using quantitative polymerase chain reaction (qPCR). A total of 1,003 Ornithodoros ticks were collected from 25 burrows and qPCR detected ASFV in ticks from 9 burrows.

Method
quantitative polymerase chain reaction (qPCR) | conventional PCR | sequencing | phylogenetic analysis
Sample type
soft ticks | ticks from warthog burrows
Geographic raw
Serengeti ecosystem | Tanzania
Country inferred
TZA
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE11733
Key finding

ASFV sequences from Ornithodoros ticks in the Serengeti clustered within genotype X based on B646L (p72) phylogenetic analysis.

Virus
Host
Natural host
Location
Not specified
Supporting text

This study aimed to detect and characterize ASFV in Ornithodoros ticks from warthog burrows in the Serengeti ecosystem. Phylogenetic analysis of the nucleotide sequences of B646L (p72) gene showed that the identified ASFV strains clustered within genotype X, which has been previously associated with outbreaks in domestic pigs in Tanzania and neighboring countries.

Genes or proteins
B646L (p72)
Analysis methods
phylogenetic analysis
OVE11734
Key finding

IGR and B602L CVR analyses showed high genetic similarity of detected ASFV from Ornithodoros ticks to strains linked to previous ASF outbreaks in Tanzania and neighboring countries.

Virus
Host
Natural host
Location
Not specified
Supporting text

This study aimed to detect and characterize ASFV in Ornithodoros ticks from warthog burrows in the Serengeti ecosystem. Analysis of the IGR and the CVR of the B602L gene confirmed the high genetic similarity between the detected strains and those linked to previous ASF outbreaks in Tanzania and neighboring countries.

Genes or proteins
IGR between I73R and I329L | B602L (CVR)
Analysis methods
comparative genomic analysis