Immune Escape Variants of H9N2 Influenza Viruses Containing Deletions at the Hemagglutinin Receptor Binding Site Retain Fitness In Vivo and Display Enhanced Zoonotic Characteristics.

Thomas P Peacock1,2 Donald J Benton3 Joe James1,2 Jean-Remy Sadeyen1 Pengxiang Chang1 Joshua E Sealy1,4 Juliet E Bryant5 Stephen R Martin3,6 Holly Shelton1 Wendy S Barclay2 Munir Iqbal7
Affiliations 7 institutions
  1. The Pirbright Institute, Pirbright, Woking, United Kingdom.
  2. Department of Virology, Imperial College London, London, United Kingdom.
  3. The Francis Crick Institute, London, United Kingdom.
  4. Royal Veterinary College, University of London, London, United Kingdom.
  5. Oxford University Clinical Research Unit and Wellcome Trust Major Overseas Programme, National Hospital of Tropical Diseases, Hanoi, Vietnam.
  6. Structural Biology Science Technology Platform, The Francis Crick Institute, London, United Kingdom.
  7. The Pirbright Institute, Pirbright, Woking, United Kingdom [email protected].

Abstract

H9N2 avian influenza viruses are enzootic in poultry across Asia and North Africa, where they pose a threat to human health as both zoonotic agents and potential pandemic candidates. Poultry vaccination against H9N2 viruses has been employed in many regions; however, vaccine effectiveness is frequently compromised due to antigenic drift arising from amino acid substitutions in the major influenza virus antigen hemagglutinin (HA). Using selection with HA-specific monoclonal antibodies, we previously identified H9N2 antibody escape mutants that contained deletions of amino acids in the 220 loop of the HA receptor binding sites (RBSs). Here we analyzed the impact of these deletions on virus zoonotic infection characteristics and fitness. We demonstrated that mutant viruses with RBS deletions are able to escape polyclonal antiserum binding and are able to infect and be transmitted between chickens. We showed that the deletion mutants have increased binding to human-like receptors and greater replication in primary human airway cells; however, the mutant HAs also displayed reduced pH and thermal stability. In summary, we infer that variant influenza viruses with deletions in the 220 loop could arise in the field due to immune selection pressure; however, due to reduced HA stability, we conclude that these viruses are unlikely to be transmitted from human to human by the airborne route, a prerequisite for pandemic emergence. Our findings underscore the complex interplay between antigenic drift and viral fitness for avian influenza viruses as well as the challenges of predicting which viral variants may pose the greatest threats for zoonotic and pandemic emergence.IMPORTANCE Avian influenza viruses, such as H9N2, cause disease in poultry as well as occasionally infecting humans and are therefore considered viruses with pandemic potential. Many countries have introduced vaccination of poultry to try to control the disease burden; however, influenza viruses are able to rapidly evolve to escape immune pressure in a process known as "antigenic drift." Previously, we experimentally generated antigenic-drift variants in the laboratory, and here, we test our "drifted" viruses to assess their zoonotic infection characteristics and transmissibility in chickens. We found that the drifted viruses were able to infect and be transmitted between chickens and showed increased binding to human-like receptors. However, the drift mutant viruses displayed reduced stability, and we predict that they are unlikely to be transmitted from human to human and cause an influenza pandemic. These results demonstrate the complex relationship between antigenic drift and the potential of avian influenza viruses to infect humans.

Supporting text Virus Host Location
antigenic drift 6 avian influenza virus 59 H9N2 27 hemagglutinin 31 pandemic 15 receptor binding site 2 zoonotic 23 Immune Evasion 25 Mutation 209 Virus Replication 191 Animals 1948 Binding Sites 89 Cells, Cultured 26 Chickens 146 Hemagglutinin Glycoproteins, Influenza Virus 180 Humans 1440 Influenza A Virus, H9N2 Subtype 71 Influenza in Birds 341 Sequence Deletion 8 Virulence 108 Virus Attachment 55

Evidence records

1 total
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE2608
Key finding

Deletions in the hemagglutinin (HA) receptor binding site enable H9N2 influenza viruses to escape polyclonal antiserum binding.

Virus
Host
Not specified
Location
Not specified
Supporting text

We demonstrated that mutant viruses with RBS deletions are able to escape polyclonal antiserum binding.

Genes or proteins
hemagglutinin (HA)
Mutations
deletions in 220 loop of the HA receptor binding site
Mechanism types
immune escape