Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor.

Jun Lan1 Jiwan Ge1 Jinfang Yu1 Sisi Shan2 Huan Zhou3 Shilong Fan1 Qi Zhang2 Xuanling Shi2 Qisheng Wang3 Linqi Zhang4 Xinquan Wang5
Affiliations 5 institutions
  1. The Ministry of Education Key Laboratory of Protein Science, Beijing Advanced Innovation Center for Structural Biology, Beijing Frontier Research Center for Biological Structure, Collaborative Innovation Center for Biotherapy, School of Life Sciences, Tsinghua University, Beijing, China.
  2. Center for Global Health and Infectious Diseases, Comprehensive AIDS Research Center, Beijing Advanced Innovation Center for Structural Biology, School of Medicine, Tsinghua University, Beijing, China.
  3. Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, China.
  4. Center for Global Health and Infectious Diseases, Comprehensive AIDS Research Center, Beijing Advanced Innovation Center for Structural Biology, School of Medicine, Tsinghua University, Beijing, China. [email protected].
  5. The Ministry of Education Key Laboratory of Protein Science, Beijing Advanced Innovation Center for Structural Biology, Beijing Frontier Research Center for Biological Structure, Collaborative Innovation Center for Biotherapy, School of Life Sciences, Tsinghua University, Beijing, China. [email protected].

Abstract

A new and highly pathogenic coronavirus (severe acute respiratory syndrome coronavirus-2, SARS-CoV-2) caused an outbreak in Wuhan city, Hubei province, China, starting from December 2019 that quickly spread nationwide and to other countries around the world1-3. Here, to better understand the initial step of infection at an atomic level, we determined the crystal structure of the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 bound to the cell receptor ACE2. The overall ACE2-binding mode of the SARS-CoV-2 RBD is nearly identical to that of the SARS-CoV RBD, which also uses ACE2 as the cell receptor4. Structural analysis identified residues in the SARS-CoV-2 RBD that are essential for ACE2 binding, the majority of which either are highly conserved or share similar side chain properties with those in the SARS-CoV RBD. Such similarity in structure and sequence strongly indicate convergent evolution between the SARS-CoV-2 and SARS-CoV RBDs for improved binding to ACE2, although SARS-CoV-2 does not cluster within SARS and SARS-related coronaviruses1-3,5. The epitopes of two SARS-CoV antibodies that target the RBD are also analysed for binding to the SARS-CoV-2 RBD, providing insights into the future identification of cross-reactive antibodies.

Supporting text Virus Host Location
Amino Acid Sequence 128 Angiotensin-Converting Enzyme 2 177 Antibodies, Neutralizing 80 Betacoronavirus 78 Binding Sites 89 Conserved Sequence 7 Crystallography, X-Ray 32 Epitopes 17 Evolution, Molecular 176 Humans 1440 Hydrogen Bonding 2 Models, Molecular 99 Peptidyl-Dipeptidase A 57 Protein Binding 193 Protein Domains 45 Receptors, Virus 204 Salts 1 SARS-CoV-2 453 Sequence Alignment 51 Severe acute respiratory syndrome-related coronavirus 78 Spike Glycoprotein, Coronavirus 274 Water 2 ACE2 protein, human 87 spike protein, SARS-CoV-2 157

Evidence records

1 total
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE3703
Key finding

SARS-CoV-2 spike receptor-binding domain directly binds the ACE2 receptor, identifying ACE2 as the cell receptor for SARS-CoV-2 entry.

Virus
Host
Not specified
Location
Not specified
Supporting text

We determined the crystal structure of the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 bound to the cell receptor ACE2.

Method
crystal structure determination
Receptors
ACE2