Achimota Pararubulavirus 3: A New Bat-Derived Paramyxovirus of the Genus Pararubulavirus.

Kate S Baker1,2,3 Mary Tachedjian4 Jennifer Barr4 Glenn A Marsh4 Shawn Todd4 Gary Crameri4 Sandra Crameri4 Ina Smith5 Clare E G Holmes4 Richard Suu-Ire6,7 Andres Fernandez-Loras2 Andrew A Cunningham2 James L N Wood1 Lin-Fa Wang4,8
Affiliations 8 institutions
  1. Department of Veterinary Medicine, University of Cambridge, Madingley Rd, Cambridge, Cambridgeshire CB3 0ES, UK.
  2. Institute of Zoology, Zoological Society of London, London, NW1 4RY, UK.
  3. Institute for Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, L69 7ZB, UK.
  4. CSIRO Health and Biosecurity, Australian Animal Health Laboratory, Portarlington Road, East Geelong, Victoria 3220, Australia.
  5. CSIRO Health & Biosecurity, Clunies Ross Street, Black Mountain, ACT 2601, Australia.
  6. Wildlife Division of the Forestry Commission, Accra P.O. Box M239, Ghana.
  7. Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra P.O. Box LG 581, Ghana.
  8. Programme in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore 169857, Singapore.

Abstract

Bats are an important source of viral zoonoses, including paramyxoviruses. The paramyxoviral Pararubulavirus genus contains viruses mostly derived from bats that are common, diverse, distributed throughout the Old World, and known to be zoonotic. Here, we describe a new member of the genus Achimota pararubulavirus 3 (AchPV3) and its isolation from the urine of African straw-coloured fruit bats on primary bat kidneys cells. We sequenced and analysed the genome of AchPV3 relative to other Paramyxoviridae, revealing it to be similar to known pararubulaviruses. Phylogenetic analysis of AchPV3 revealed the failure of molecular detection in the urine sample from which AchPV3 was derived and an attachment protein most closely related with AchPV2-a pararubulavirus known to cause cross-species transmission. Together these findings add to the picture of pararubulaviruses, their sources, and variable zoonotic potential, which is key to our understanding of host restriction and spillover of bat-derived paramyxoviruses. AchPV3 represents a novel candidate zoonosis and an important tool for further study.

Supporting text Virus Host Location
bat 54 electron microscopy 1 genomics 39 molecular detection 5 paramyxovirus 18 pararubulavirus 2 primary cell lines 1 virus 12 virus discovery 10 zoonosis 116 Phylogeny 805 Animals 1948 Cells, Cultured 26 Chiroptera 371 Chlorocebus aethiops 70 Genome, Viral 317 Kidney 8 Paramyxoviridae Infections 16 Paramyxovirinae 14 RNA, Viral 193 Vero Cells 55 Whole Genome Sequencing 32 Zoonoses 397

Evidence records

3 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE4244
Key finding

Achimota pararubulavirus 3 was successfully isolated from the urine of African straw-coloured fruit bats using primary bat kidney cells.

Virus
Host
Location
Not specified
Supporting text

Here, we describe a new member of the genus Achimota pararubulavirus 3 (AchPV3) and its isolation from the urine of African straw-coloured fruit bats on primary bat kidneys cells.

Sample type
urine
Evidence type
1 records
OVE4246
Key finding

Achimota pararubulavirus 3 (AchPV3) was isolated from African straw-coloured fruit bats, supporting their role as an ecological source and potential maintenance host of bat-derived pararubulaviruses.

Virus
Host
Location
Not specified
Supporting text

We describe a new member of the genus Achimota pararubulavirus 3 (AchPV3) and its isolation from the urine of African straw-coloured fruit bats on primary bat kidney cells. Together these findings add to the picture of pararubulaviruses, their sources, and variable zoonotic potential.

Method
virus isolation | genome sequencing | phylogenetic analysis
Sample type
urine
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE4245
Key finding

Phylogenetic analysis showed that Achimota pararubulavirus 3 (AchPV3) is similar to known pararubulaviruses and has an attachment protein most closely related to Achimota pararubulavirus 2 (AchPV2).

Virus
Host
Not specified
Location
Not specified
Supporting text

We sequenced and analysed the genome of AchPV3 relative to other Paramyxoviridae, revealing it to be similar to known pararubulaviruses. Phylogenetic analysis of AchPV3 revealed an attachment protein most closely related with AchPV2-a pararubulavirus known to cause cross-species transmission.

Genes or proteins
attachment protein
Analysis methods
phylogenetic analysis | genome sequencing | comparative genomic analysis