An outbreak of SARS-CoV-2 omicron variant and deaths of three lions in a zoo.

Yudai Kuroda1 Miki Ozaki2 Yusuke Sakai3 Eri Uchida-Fujii4 Ikumi Hanada2 Tsukasa Yamamoto1,5 Kango Tatemoto1 Yuichiro Hirata3 Yuko Sato3 Harutaka Katano3 Noriyo Nagata3 Hirofumi Kato4 Tomoe Shimada4 Tadaki Suzuki3 Tatsuko Nakao2 Ken Maeda1,5
Affiliations 5 institutions
  1. Department of Veterinary Science, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan.
  2. Adventure World, 2399 Katada, Shirahama-cho, Nishimuro-gun, Wakayama 649-2201, Japan.
  3. Department of Pathology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan.
  4. Center for Field Epidemic Intelligence Research and Professional Development, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan.
  5. Joint Graduate School of Veterinary Medicine, Yamaguchi University, 1677-1 Yoshida, Yamaguchi 753-8515, Japan.

Abstract

There have been reports of the transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from humans to various mammalian species. Some infected animals show clinical signs and may even die in rare cases. Outbreaks of SARS-CoV-2 have been reported in zoos where susceptible animals are bred in high population densities. However, there have been few reports of omicron variant outbreaks in zoo animals. From late 2022 to 2023, an outbreak of the SARS-CoV-2 omicron variant occurred in one Japanese zoo. A total of 24 lions were housed in the zoo; 13 of them showed respiratory symptoms, and the three oldest lions died. Molecular and histopathological analyses revealed that the deceased lions were infected with SARS-CoV-2 omicron BF.7.15. Virus-neutralization tests showed that all 21 lions were positive for antibodies against the omicron variant, but not against the delta variant. In addition, three tigers and one bear in the same or neighboring building as the lions possessed antibodies against the omicron variant. This is a very rare report on the outbreak of a SARS-CoV-2 omicron variant infection that resulted in the death of animals. This finding demonstrates the importance of continuous countermeasures to protect non-vaccinated animals from SARS-CoV-2 infection.

Supporting text Virus Host Location
Lion 4 Omicron 9 Reverse zoonosis 38 SARS-CoV-2 550

Evidence records

4 total
Zoonotic Surveillance
3 records · 2 evidence types
Evidence type
1 records
OVE8338
Key finding

Molecular and histopathological analyses detected SARS-CoV-2 omicron BF.7.15 in deceased lions from a Japanese zoo outbreak.

Virus
Host
Location
Supporting text

From late 2022 to 2023, an outbreak of the SARS-CoV-2 omicron variant occurred in one Japanese zoo. Molecular and histopathological analyses revealed that the deceased lions were infected with SARS-CoV-2 omicron BF.7.15.

Method
molecular analysis | histopathological analysis
Sample type
tissues from deceased lions
Geographic raw
Japanese zoo
Country inferred
JPN
Evidence type
2 records
OVE8339
Key finding

All 21 tested lions were seropositive for antibodies to the SARS-CoV-2 omicron variant but negative for the delta variant.

Virus
Host
Location
Not specified
Supporting text

Virus-neutralization tests showed that all 21 lions were positive for antibodies against the omicron variant, but not against the delta variant.

Method
virus-neutralization test
Sample type
serum
Transmission Evidence
1 records · 1 evidence types
Evidence type
1 records
OVE8337
Key finding

An outbreak of the SARS-CoV-2 omicron variant occurred from late 2022 to 2023 in a Japanese zoo, affecting 13 of 24 lions and causing death of three lions.

Virus
Host
Location
Supporting text

From late 2022 to 2023, an outbreak of the SARS-CoV-2 omicron variant occurred in one Japanese zoo. A total of 24 lions were housed in the zoo; 13 of them showed respiratory symptoms, and the three oldest lions died.

Method
molecular analysis | histopathological analysis | virus-neutralization test
Transmission direction
same-species transmission
Geographic raw
Japan
Country inferred
JPN
Outbreak setting
Japanese zoo
Outbreak time
late 2022 to 2023
Outbreak scale
24 lions housed; 13 symptomatic; 3 deaths