Literature detail

Tetracistronic minigenomes elucidate a functional promoter for Ghana virus and unveils Cedar virus replicase promiscuity for all henipaviruses.

Griffin D Haas1 Shreyas Kowdle1 Katharina S Schmitz2 Kristopher D Azarm1 Kendra N Johnson3 William R Klain1 Alexander N Freiberg3 Robert M Cox4 Richard K Plemper4 Benhur Lee1
Affiliations 4 institutions
  1. Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  2. Department of Viroscience, Erasmus MC, Rotterdam, the Netherlands.
  3. Department of Pathology, University of Texas Medical Branch, Galveston, Texas, USA.
  4. Institute for Biomedical Sciences, Georgia State University, Atlanta, Georgia, USA.
PMID 39345144 2024 J Virol eng ppublish
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Article

Publication summary

Batborne henipaviruses, such as Nipah and Hendra viruses, represent a major threat to global health due to their propensity for spillover, severe pathogenicity, and high mortality rate in human hosts. Coupled with the absence of approved vaccines or therapeutics, work with the prototypical species and uncharacterized, emergent species is restricted to high biocontainment facilities. There is a scarcity of such specialized spaces for research, and often, the scope and capacity of research, which can be conducted at BSL-4, is limited. Therefore, there is a pressing need for innovative life-cycle modeling systems to enable comprehensive research within lower biocontainment settings. This work showcases tetracistronic, transcription, and replication-competent minigenomes for the Nipah, Hendra, and Cedar viruses, which encode viral proteins facilitating budding, fusion, and receptor binding. We validate the functionality of all encoded viral proteins and demonstrate a variety of applications to interrogate the viral life cycle. Notably, we found that the Cedar virus replicase exhibits remarkable promiscuity, efficiently driving replication and transcription of minigenomes from all tested henipaviruses. We also apply this technology to Ghana virus (GhV), an emergent species that has so far not been isolated in culture. We demonstrate that the reported sequence of GhV is incomplete, but that this missing sequence can be substituted with analogous sequences from other henipaviruses. The use of our GhV system establishes the functionality of the GhV replicase and identifies two antivirals that are highly efficacious against the GhV polymerase. Henipaviruses are recognized as significant global health threats due to their high mortality rates and lack of effective vaccines or therapeutics. Due to the requirement for high biocontainment facilities, the scope of research which may be conducted on henipaviruses is limited. To address this challenge, we developed innovative tetracistronic, transcription, and replication-competent minigenomes. We demonstrate that these systems replicate key aspects of the viral life cycle, such as budding, fusion, and receptor binding, and are safe for use in lower biocontainment settings. Importantly, the application of this system to the Ghana virus revealed that its known sequence is incomplete; however, substituting the missing sequences with those from other henipaviruses allowed us to overcome this challenge. We demonstrate that the Ghana virus replicative machinery is functional and can identify two orally efficacious antivirals effective against it. Our research offers a versatile system for life-cycle modeling of highly pathogenic henipaviruses at low biocontainment.

antivirals emerging pathogens Ghana virus henipavirus high biocontainment minigenome Nipah virus paramyxovirus reverse genetics viral RNA dependent RNA polymerase Genome, Viral Henipavirus Virus Replication Animals Hendra Virus Henipavirus Infections Humans Nipah Virus

Structured evidence records

Evidence records

4 total
2 records
Extraction confidence 0.85
Key finding

Cedar virus replicase can drive replication and transcription across multiple henipavirus minigenomes, suggesting cross-species polymerase adaptation.

Virus
Host
Not specified
Location
Not specified
Supporting text

Notably, we found that the Cedar virus replicase exhibits remarkable promiscuity, efficiently driving replication and transcription of minigenomes from all tested henipaviruses.

Genes or proteins
replicase
Mechanism types
polymerase_activity; replication_efficiency
Extraction confidence 0.80
Key finding

Ghana virus replicase remains functional when missing genomic sequence is replaced by homologous regions from other henipaviruses, indicating conserved polymerase adaptation among henipaviruses.

Virus
Host
Not specified
Location
Not specified
Supporting text

We demonstrate that the reported sequence of GhV is incomplete, but that this missing sequence can be substituted with analogous sequences from other henipaviruses. The use of our GhV system establishes the functionality of the GhV replicase.

Genes or proteins
replicase
Mechanism types
polymerase_activity; replication_efficiency
1 records
Extraction confidence 0.70
Key finding

Cedar virus replicase can replicate minigenomes from multiple henipaviruses, and the Ghana virus genome contains missing sequence regions that can be functionally substituted by analogous henipavirus sequences, demonstrating conserved genomic elements among henipaviruses.

Virus
Host
Not specified
Location
Not specified
Supporting text

Notably, we found that the Cedar virus replicase exhibits remarkable promiscuity, efficiently driving replication and transcription of minigenomes from all tested henipaviruses. We also apply this technology to Ghana virus (GhV)... We demonstrate that the reported sequence of GhV is incomplete, but that this missing sequence can be substituted with analogous sequences from other henipaviruses.

Genes or proteins
replicase; promoter; RNA-dependent RNA polymerase
Analysis methods
minigenome assay; comparative genome analysis
1 records
Extraction confidence 0.65
Key finding

Replication-competent minigenomes for Nipah, Hendra, and Cedar viruses expressed viral proteins that mediate fusion and receptor binding, supporting functional receptor usage modeling in a lower biocontainment system.

Virus
Host
Not specified
Location
Not specified
Supporting text

This work showcases tetracistronic, transcription, and replication-competent minigenomes for the Nipah, Hendra, and Cedar viruses, which encode viral proteins facilitating budding, fusion, and receptor binding.

Method
minigenome system; functional validation