Discovery and Evolutionary Analysis of a Novel Bat-Borne Paramyxovirus.

Wentao Zhu1 Yuyuan Huang1 Xiaojie Yu2 Haiyun Chen2 Dandan Li2 Libo Zhou2 Qianni Huang1 Liyun Liu1 Jing Yang1,3,4 Shan Lu1,3,4
Affiliations 4 institutions
  1. State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
  2. Hainan Provincial Center for Disease Control and Prevention, Haikou 570203, China.
  3. Shanghai Public Health Clinical Center, Fudan University, Shanghai 201508, China.
  4. Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing 100730, China.

Abstract

Paramyxoviruses are a group of RNA viruses, such as mumps virus, measles virus, Nipah virus, Hendra virus, Newcastle disease virus, and parainfluenza virus, usually transmitted by airborne droplets that are predominantly responsible for acute respiratory diseases. In this paper, we identified a novel paramyxovirus belonging to genus Jeilongvirus infecting 4/112 (3.6%) bats from two trapping sites of Hainan Province of China. In these animals, the viral RNA was detected exclusively in kidney tissues. This is the first full-length Jeilongvirus genome (18,095 nucleotides) from bats of genus Hipposideros, which exhibits a canonical genome organization and encodes SH and TM proteins. Results, based on phylogenic analysis and genetic distances, indicate that the novel paramyxovirus formed an independent lineage belonging to genus Jeilongvirus, representing, thus, a novel species. In addition, the virus-host macro-evolutionary analysis revealed that host-switching was not only a common co-phylogenetic event, but also a potential mechanism by which rats are infected by bat-origin Jeilongvirus through cross-species virus transmission, indicating a bat origin of the genus Jeilongvirus. Overall, our study broadens the viral diversity, geographical distribution, host range, and evolution of genus Jeilongvirus.

Supporting text Virus Host Location
bat 54 co-evolutionary 1 Jeilongvirus 4 paramyxovirus 18 virus discovery 10 Biological Coevolution 2 Animals 1948 China 229 Chiroptera 371 Genome, Viral 317 Host Specificity 132 Kidney 8 Paramyxoviridae 17 Phylogeny 805 RNA, Viral 193 Species Specificity 84 Viral Proteins 152

Evidence records

4 total
Zoonotic Surveillance
2 records · 1 evidence types
Evidence type
2 records
OVE5688
Key finding

A novel paramyxovirus belonging to genus Jeilongvirus was detected in bats from Hainan Province of China.

Virus
Host
Location
Supporting text

we identified a novel paramyxovirus belonging to genus Jeilongvirus infecting 4/112 (3.6%) bats from two trapping sites of Hainan Province of China.

Method
viral RNA detection
Geographic raw
Hainan Province of China
Country inferred
CHN
OVE5689
Key finding

Viral RNA of the Jeilongvirus-associated paramyxovirus was detected exclusively in kidney tissues of infected bats.

Virus
Host
Location
Not specified
Supporting text

In these animals, the viral RNA was detected exclusively in kidney tissues.

Method
viral RNA detection
Sample type
kidney tissues
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE5690
Key finding

Phylogenetic analysis showed that the novel paramyxovirus detected in bats formed an independent lineage within genus Jeilongvirus, representing a novel viral species.

Virus
Host
Location
Not specified
Supporting text

Results, based on phylogenic analysis and genetic distances, indicate that the novel paramyxovirus formed an independent lineage belonging to genus Jeilongvirus, representing, thus, a novel species.

Analysis methods
phylogenetic analysis | genetic distance analysis
OVE5691
Key finding

Virus-host macro-evolutionary analysis suggested that rats were infected by bat-origin Jeilongvirus through cross-species transmission.

Virus
Host
Location
Not specified
Supporting text

the virus-host macro-evolutionary analysis revealed that host-switching was not only a common co-phylogenetic event, but also a potential mechanism by which rats are infected by bat-origin Jeilongvirus through cross-species virus transmission, indicating a bat origin of the genus Jeilongvirus.

Analysis methods
virus-host macro-evolutionary analysis | co-phylogenetic analysis | phylogenic analysis