Literature detail

Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents.

Wen-Ping Guo1 Xian-Dan Lin Wen Wang Jun-Hua Tian Mei-Li Cong Hai-Lin Zhang Miao-Ruo Wang Run-Hong Zhou Jian-Bo Wang Ming-Hui Li Jianguo Xu Edward C Holmes Yong-Zhen Zhang
Affiliations 1 institutions
  1. State Key Laboratory for Infectious Disease Prevention and Control, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.
PMID 23408889 2013 PLoS Pathog eng ppublish
PubMed DOI Browse context

Article

Publication summary

Hantaviruses are among the most important zoonotic pathogens of humans and the subject of heightened global attention. Despite the importance of hantaviruses for public health, there is no consensus on their evolutionary history and especially the frequency of virus-host co-divergence versus cross-species virus transmission. Documenting the extent of hantavirus biodiversity, and particularly their range of mammalian hosts, is critical to resolving this issue. Here, we describe four novel hantaviruses (Huangpi virus, Lianghe virus, Longquan virus, and Yakeshi virus) sampled from bats and shrews in China, and which are distinct from other known hantaviruses. Huangpi virus was found in Pipistrellus abramus, Lianghe virus in Anourosorex squamipes, Longquan virus in Rhinolophus affinis, Rhinolophus sinicus, and Rhinolophus monoceros, and Yakeshi virus in Sorex isodon, respectively. A phylogenetic analysis of the available diversity of hantaviruses reveals the existence of four phylogroups that infect a range of mammalian hosts, as well as the occurrence of ancient reassortment events between the phylogroups. Notably, the phylogenetic histories of the viruses are not always congruent with those of their hosts, suggesting that cross-species transmission has played a major role during hantavirus evolution and at all taxonomic levels, although we also noted some evidence for virus-host co-divergence. Our phylogenetic analysis also suggests that hantaviruses might have first appeared in Chiroptera (bats) or Soricomorpha (moles and shrews), before emerging in rodent species. Overall, these data indicate that bats are likely to be important natural reservoir hosts of hantaviruses.

Animals Biological Evolution China Chiroptera Disease Reservoirs Eulipotyphla Geography Hantavirus Infections Humans Orthohantavirus Phylogeny RNA, Viral Rodentia Sequence Analysis, DNA Shrews

Structured evidence records

Evidence records

6 total
2 records
Extraction confidence 0.95
Key finding

Novel hantaviruses were detected in bats and shrews collected in China as part of viral surveillance.

Virus
Host
Location
Supporting text

Here, we describe four novel hantaviruses (Huangpi virus, Lianghe virus, Longquan virus, and Yakeshi virus) sampled from bats and shrews in China, and which are distinct from other known hantaviruses.

Method
virus isolation; genetic analysis
Geographic raw
China
Country inferred
China
Extraction confidence 0.95
Key finding

A novel hantavirus, Lianghe virus, was detected in shrews collected in China through field surveillance.

Virus
Host
Location
Supporting text

Here, we describe four novel hantaviruses (Huangpi virus, Lianghe virus, Longquan virus, and Yakeshi virus) sampled from bats and shrews in China, and which are distinct from other known hantaviruses.

Method
virus isolation; genetic analysis
Geographic raw
China
Country inferred
China
1 records
Extraction confidence 0.90
Key finding

Phylogenetic evidence indicates that hantaviruses have undergone cross-species transmission among bats, shrews, and rodents.

Virus
Location
Supporting text

The phylogenetic histories of the viruses are not always congruent with those of their hosts, suggesting that cross-species transmission has played a major role during hantavirus evolution and at all taxonomic levels. Our phylogenetic analysis also suggests that hantaviruses might have first appeared in Chiroptera (bats) or Soricomorpha (moles and shrews), before emerging in rodent species.

Method
phylogenetic analysis; sequence analysis
Study design
phylogenetic analysis
Transmission direction
animal-to-animal
Geographic raw
China
Country inferred
China
1 records
Extraction confidence 0.95
Key finding

Phylogenetic analysis of novel hantavirus genomes from bats and shrews in China revealed four distinct phylogroups, evidence of ancient reassortment, and host-virus incongruence indicating cross-species transmission.

Virus
Location
Not specified
Supporting text

Here, we describe four novel hantaviruses (Huangpi virus, Lianghe virus, Longquan virus, and Yakeshi virus) sampled from bats and shrews in China... A phylogenetic analysis of the available diversity of hantaviruses reveals the existence of four phylogroups... the occurrence of ancient reassortment events between the phylogroups. Notably, the phylogenetic histories of the viruses are not always congruent with those of their hosts, suggesting cross-species transmission has played a major role during hantavirus evolution.

Analysis methods
phylogenetic analysis; sequence analysis
1 records
Extraction confidence 0.85
Key finding

Ancient reassortment occurred between hantavirus phylogroups infecting multiple mammalian hosts.

Virus
Host
Not specified
Location
Not specified
Supporting text

A phylogenetic analysis of the available diversity of hantaviruses reveals the existence of four phylogroups that infect a range of mammalian hosts, as well as the occurrence of ancient reassortment events between the phylogroups.

Event type
reassortment
1 records
Extraction confidence 0.80
Key finding

Bats in China were identified as important natural reservoir hosts for multiple novel hantaviruses.

Virus
Host
Location
Supporting text

Here, we describe four novel hantaviruses (Huangpi virus, Lianghe virus, Longquan virus, and Yakeshi virus) sampled from bats and shrews in China ... Overall, these data indicate that bats are likely to be important natural reservoir hosts of hantaviruses.

Method
sampling; phylogenetic analysis
Geographic raw
China
Country inferred
China