H9N2 low pathogenic avian influenza in Pakistan (2012-2015).

Dong-Hun Lee1 David E Swayne1 Poonam Sharma1 Shafqat Fatima Rehmani2 Abdul Wajid3 David L Suarez1 Claudio Afonso1
Affiliations 3 institutions
  1. Southeast Poultry Research Laboratory, Agricultural Research Service, U.S. Department of Agriculture, Athens , Georgia , USA.
  2. Quality Operations Laboratory (QOL) , University of Veterinary and Animal Sciences , Lahore , Pakistan.
  3. Institute of Biochemistry and Biotechnology (IBBt), University of Veterinary and Animal Sciences , Lahore , Pakistan.

Abstract

Significant economic losses from deaths and decreased egg production have resulted from H9N2 low pathogenic avian influenza virus (LPAIV) infections in poultry across North Africa, the Middle East and Asia. The H9N2 LPAIVs have been endemic in Pakistani poultry since 1996, but no new viruses have been reported since 2010. Because novel genotypes of Pakistani H9N2 contain mammalian host-specific markers, recent surveillance is essential to better understand any continuing public health risk. Here the authors report on four new H9N2 LPAIVs, three from 2015 and one from 2012. All of the viruses tested in this study belonged to Middle East B genetic group of G1 lineage and had PAKSSR/G motif at the haemagglutinin cleavage site. The mammalian host-specific markers at position 226 in the haemagglutinin receptor-binding site and internal genes suggest that Pakistan H9N2 viruses are still potentially infectious for mammals. Continued active surveillance in poultry and mammals is needed to monitor the spread and understand the potential for zoonotic infection by these H9N2 LPAIVs.

Supporting text Virus Host Location
avian influenza 57 H9N2 27 Pakistan 10

Evidence records

3 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE2378
Key finding

Four new H9N2 low pathogenic avian influenza viruses were detected in Pakistani poultry between 2012 and 2015.

Virus
Host
Location
Supporting text

The H9N2 LPAIVs have been endemic in Pakistani poultry since 1996, but no new viruses have been reported since 2010. Here the authors report on four new H9N2 LPAIVs, three from 2015 and one from 2012.

Method
surveillance | viral genome sequencing
Geographic raw
Pakistan
Country inferred
PAK
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE2380
Key finding

Mammalian host-specific markers at position 226 in the haemagglutinin receptor-binding site and internal genes of Pakistan H9N2 avian influenza viruses indicate molecular adaptations linked to mammalian infectivity.

Virus
Host
Not specified
Location
Not specified
Supporting text

The mammalian host-specific markers at position 226 in the haemagglutinin receptor-binding site and internal genes suggest that Pakistan H9N2 viruses are still potentially infectious for mammals.

Genes or proteins
haemagglutinin | internal genes
Mutations
position 226
Mechanism types
receptor binding | host-range expansion
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE2379
Key finding

The H9N2 low pathogenic avian influenza viruses detected in Pakistan between 2012 and 2015 clustered within the Middle East B genetic group of the G1 lineage based on phylogenetic analysis.

Virus
Host
Location
Not specified
Supporting text

All of the viruses tested in this study belonged to Middle East B genetic group of G1 lineage and had PAKSSR/G motif at the haemagglutinin cleavage site. Significant economic losses from deaths and decreased egg production have resulted from H9N2 low pathogenic avian influenza virus (LPAIV) infections in poultry across North Africa, the Middle East and Asia.

Genes or proteins
haemagglutinin gene
Analysis methods
phylogenetic analysis | genetic lineage comparison