Insights into genetic diversity and biological propensities of potentially zoonotic avian influenza H9N2 viruses circulating in Egypt.

Mahmoud M Naguib1,2 Abdel-Satar Arafa2 Rokshana Parvin3 Martin Beer4 Thomas Vahlenkamp3 Timm C Harder5
Affiliations 5 institutions
  1. Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, Greifswald Insel-Riems 17493, Germany
  2. National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Giza 12618, Egypt.
  3. Department of Pathology Faculty of Veterinary Science Bangladesh Agricultural University Mymensingh 2202, Bangladesh.
  4. Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, Greifswald Insel-Riems 17493, Germany.
  5. Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Suedufer 10, Greifswald Insel-Riems 17493, Germany. Electronic address: [email protected].

Abstract

Low pathogenic avian influenza (LPAI) H9N2 viruses have established endemic status in Egyptian poultry populations since 2012. Recently, four cases of human H9N2 virus infections in Egypt demonstrated the zoonotic potential of these viruses. Egyptian H9N2 viruses obtained from 2011 to 2014 phylogenetically grouped into three clusters (1-3) within subclade B of the G1 lineage. Antigenically, a close clustering of the Egyptian H9N2 viruses with other recent G1-B like H9N2 strains and a significant antigenic distance from viruses outside the G1-B lineage was evident. Recent Egyptian LPAIV H9N2 showed a tendency to increased binding with erythrocytes expressing α 2,6-linked sialic acid which correlated with the Q226L amino acid substitution at the receptor binding unit of the hemagglutinin (Q234L, H9 numbering). Sequence analyses of the N2 neuraminidase (NA) revealed substitutions in the NA hemadsorption site similar to the N2 of prepandemic H3N2/1968, but no distinct antigenic or functional characteristics of the H9N2 NA associated with increased zoonotic potential could be identified.

Supporting text Virus Host Location
Antigenic characterization 2 Avian influenza 57 Egypt 24 H9N2 27 Human 14 Neuraminidase activity 1 Zoonosis 116 Genetic Variation 127 Animals 1948 Cluster Analysis 31 Egypt 22 Genotype 137 Hemagglutinin Glycoproteins, Influenza Virus 180 Humans 1440 Influenza A Virus, H9N2 Subtype 71 Influenza in Birds 341 Influenza, Human 286 Neuraminidase 62 Phylogeny 805 Poultry 112 Receptors, Virus 204 Serogroup 1 Sialic Acids 29 Viral Proteins 152

Evidence records

3 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE2705
Key finding

Low pathogenic avian influenza H9N2 viruses were detected and have established endemic circulation in Egyptian poultry populations since 2012.

Virus
Host
Location
Supporting text

Low pathogenic avian influenza (LPAI) H9N2 viruses have established endemic status in Egyptian poultry populations since 2012.

Method
virus detection | surveillance monitoring
Geographic raw
Egypt
Country inferred
EGY
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE2708
Key finding

Egyptian H9N2 viruses showed increased binding to α2,6-linked sialic acid receptors, associated with a Q226L substitution in the HA receptor-binding site.

Virus
Host
Not specified
Location
Not specified
Supporting text

Recent Egyptian LPAIV H9N2 showed a tendency to increased binding with erythrocytes expressing α 2,6-linked sialic acid which correlated with the Q226L amino acid substitution at the receptor binding unit of the hemagglutinin (Q234L, H9 numbering).

Method
hemagglutination binding assay | sequence analysis of HA receptor-binding site
Receptors
α2,6-linked sialic acid
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE2707
Key finding

Egyptian H9N2 viruses from 2011 to 2014 formed three phylogenetic clusters within subclade B of the G1 lineage.

Virus
Host
Location
Not specified
Supporting text

Egyptian H9N2 viruses obtained from 2011 to 2014 phylogenetically grouped into three clusters (1-3) within subclade B of the G1 lineage.

Analysis methods
phylogenetic analysis