Investigations on the Potential Role of Free-Ranging Wildlife as a Reservoir of SARS-CoV-2 in Switzerland.

Juliette Kuhn1 Iris Marti1 Marie-Pierre Ryser-Degiorgis1 Kerstin Wernike2 Sarah Jones3 Grace Tyson3 Gary Delalay1 Patrick Scherrer1 Stéphanie Borel1 Margaret J Hosie4 Anja Kipar5 Evelyn Kuhlmeier6 Tatjana Chan6 Regina Hofmann-Lehmann6 Marina L Meli6
Affiliations 6 institutions
  1. Institute for Fish and Wildlife Health, Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Länggassstrasse 122, 3012 Bern, Switzerland.
  2. Institute of Diagnostic Virology, Friedrich-Loeffler-Institut (FLI), Südufer 10, 17493 Greifswald-Insel Riems, Germany.
  3. School of Biodiversity, One Health, and Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Bearsden Road, Glasgow G61 1QH, UK.
  4. MRC-University of Glasgow Centre for Virus, College of Medical, Veterinary and Life Sciences, University of Glasgow, Garscube Campus, Bearsden Road, Glasgow G61 1QH, UK.
  5. Institute of Veterinary Pathology, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 268, 8057 Zurich, Switzerland.
  6. Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland.

Abstract

Amid the SARS-CoV-2 pandemic, concerns surfaced regarding the spread of the virus to wildlife. Switzerland lacked data concerning the exposure of free-ranging animals to SARS-CoV-2 during this period. This study aimed to investigate the potential exposure of Swiss free-ranging wildlife to SARS-CoV-2. From 2020 to 2023, opportunistically collected samples from 712 shot or found dead wild mustelids (64 European stone and pine martens, 13 European badgers, 10 European polecats), canids (449 red foxes, 41 gray wolves, one golden jackal) and felids (56 Eurasian lynx, 18 European wildcats), as well as from 45 captured animals (39 Eurasian lynx, 6 European wildcats) were tested. A multi-step serological approach detecting antibodies to the spike protein receptor binding domain (RBD) and N-terminal S1 subunit followed by surrogate virus neutralization (sVNT) and pseudotype-based virus neutralization assays against different SARS-CoV-2 variants was performed. Additionally, viral RNA loads were quantified in lung tissues and in oronasal, oropharyngeal, and rectal swabs by reverse transcription polymerase chain reactions (RT-qPCRs). Serologically, SARS-CoV-2 exposure was confirmed in 14 free-ranging Swiss red foxes (prevalence 3.1%, 95% CI: 1.9-5.2%), two Eurasian lynx (2.2%, 95% CI: 0.6-7.7%), and one European wildcat (4.2%, 95% CI: 0.2-20.2%). Two positive foxes exhibited neutralization activity against the BA.2 and BA.1 Omicron variants. No active infection (viral RNA) was detected in any animal tested. This is the first report of SARS-CoV-2 antibodies in free-ranging red foxes, Eurasian lynx, and European wildcats worldwide. It confirms the spread of SARS-CoV-2 to free-ranging wildlife in Switzerland but does not provide evidence of reservoir formation. Our results underscore the susceptibility of wildlife populations to SARS-CoV-2 and the importance of understanding diseases in a One Health Concept.

Supporting text Virus Host Location
fox 4 indirect immunofluorescence test 1 lynx 7 one health 98 pseudotype-based virus neutralization assay 1 RBD-ELISA 1 S1-ELISA 1 spillover 105 surrogate virus neutralization test 1 wildcat 1 zoonosis 116 Animals, Wild 187 Antibodies, Viral 212 COVID-19 425 Disease Reservoirs 149 SARS-CoV-2 453 Animals 1948 Antibodies, Neutralizing 80 Foxes 17 Humans 1440 Lynx 7 Neutralization Tests 31 Switzerland 9 Viral Load 36

Evidence records

4 total
Zoonotic Surveillance
4 records · 3 evidence types
Evidence type
1 records
OVE8424
Key finding

No SARS-CoV-2 viral RNA was detected in any tested wildlife from Switzerland by RT-qPCR.

Virus
Host
Location
Supporting text

No active infection (viral RNA) was detected in any animal tested.

Method
reverse transcription polymerase chain reaction (RT-qPCR)
Sample type
lung tissues | oronasal swabs | oropharyngeal swabs | rectal swabs
Geographic raw
Switzerland
Country inferred
CHE
Evidence type
2 records
OVE8422
Key finding

SARS-CoV-2 antibodies were detected in 14 red foxes, two Eurasian lynx, and one European wildcat from Switzerland, confirming wildlife exposure.

Virus
Host
Location
Not specified
Supporting text

Serologically, SARS-CoV-2 exposure was confirmed in 14 free-ranging Swiss red foxes (prevalence 3.1%, 95% CI: 1.9-5.2%), two Eurasian lynx (2.2%, 95% CI: 0.6-7.7%), and one European wildcat (4.2%, 95% CI: 0.2-20.2%).

Method
multi-step serological approach | antibody detection to spike protein receptor binding domain (RBD) | S1 subunit ELISA | surrogate virus neutralization test (sVNT) | pseudotype-based virus neutralization assay
Sample type
serum samples
Evidence type
1 records
OVE8425
Key finding

SARS-CoV-2 exposure was detected in free-ranging wildlife in Switzerland, but no evidence of reservoir formation was found.

Virus
Host
Not specified
Location
Supporting text

It confirms the spread of SARS-CoV-2 to free-ranging wildlife in Switzerland but does not provide evidence of reservoir formation.

Method
serological assays | RT-qPCR
Sample type
lung tissues | oronasal swabs | oropharyngeal swabs | rectal swabs | serum
Geographic raw
Switzerland
Country inferred
CHE