Literature detail

The Finding of the Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV-2) in a Wild Eurasian River Otter (<i>Lutra lutra</i>) Highlights the Need for Viral Surveillance in Wild Mustelids.

Miguel Padilla-Blanco1 Jordi Aguiló-Gisbert2 Vicente Rubio3 Víctor Lizana2,4 Eva Chillida-Martínez2 Jesús Cardells2,4 Elisa Maiques5 Consuelo Rubio-Guerri1
Affiliations 5 institutions
  1. Department of Pharmacy, Facultad de Ciencias de la Salud, Universidad Cardenal Herrera-CEU, Valencia, Spain.
  2. Servicio de Análisis, Investigación, Gestión de Animales Silvestres (SAIGAS), Facultad de Veterinaria, Universidad Cardenal Herrera-CEU, Valencia, Spain.
  3. Instituto de Biomedicina de Valencia del Consejo Superior de Investigaciones Científicas, Centro de Investigació Biomédica en la Red sobre Enfermedades Raras, Instituto de Salud Carlos III, Valencia, Spain.
  4. Wildlife Ecology & Health Group (WE&H), Universitat Autònoma de Barcelona (UAB), Barcelona, Spain.
  5. Department of Biomedical Sciences, Facultad de Ciencias de la Salud, Universidad Cardenal Herrera-CEU, Valencia, Spain.
PMID 35433914 2022 Front Vet Sci eng epublish
PubMed DOI Browse context

Article

Publication summary

Animals have been involved in the three known outbreaks of severe respiratory syndromes due to coronaviruses (years 2005, 2012, and 2019). The pandemic nature of the SARS-CoV-2 outbreak increases the likelihood of infection from humans of susceptible animal species that, thus, could become secondary viral hosts and even disease reservoirs. We present evidence of spillover infection of wild mustelids by reporting the presence of SARS-CoV-2 in a Eurasian river otter found near a water reservoir in the Valencian Community (Spain). We detected the virus using two different commercial RTqPCR assays on RNA extracted from the nasopharynx (swabbing) and from lung tissue and mediastinal lymph node homogenates. The corresponding samples from two additional otters from distant sites tested negative in identical assays. The diagnosis in the positive otter was confirmed by two-tube RT-PCR assay in which RNA was first retrotranscribed, and then specific regions of the spike (<i>S</i>), nucleocapsid (<i>N</i>), and <i>ORF10</i> genes were separately amplified from the produced cDNA, followed by electrophoretic visualization and Sanger sequencing. The sequences of the amplified products revealed some non-synonymous changes in the <i>N</i> and <i>ORF10</i> partial sequences, relative to the consensus sequence. These changes, identified already in human patient samples, point to human origin of the virus, although their specific combination was unique. These findings, together with our previous report of SARS-CoV-2 infection of feral American mink, highlight the need for SARS-CoV-2 surveillance of wild or feral mustelids to evaluate the risk that these animals could become SARS-CoV-2 reservoirs.

Lutra lutra RT-PCR SARS-CoV-2 Spain wildlife

Structured evidence records

Evidence records

3 total
1 records
Extraction confidence 0.80
Key finding

SARS-CoV-2 detected in a Eurasian river otter showed non-synonymous mutations in the N and ORF10 genes, a unique combination compared with human sequences, indicating molecular variation in this wild host.

Virus
Host
Not specified
Location
Not specified
Supporting text

The sequences of the amplified products revealed some non-synonymous changes in the N and ORF10 partial sequences, relative to the consensus sequence. These changes, identified already in human patient samples, point to human origin of the virus, although their specific combination was unique.

Genes or proteins
N; ORF10
Mechanism types
genetic_variation
1 records
Extraction confidence 0.95
Key finding

SARS-CoV-2 detected in a wild Eurasian river otter in Spain showed sequence similarities to human-origin viruses, supporting human-to-otter spillback.

Virus
Location
Supporting text

We present evidence of spillover infection of wild mustelids by reporting the presence of SARS-CoV-2 in a Eurasian river otter found near a water reservoir in the Valencian Community (Spain)... These changes, identified already in human patient samples, point to human origin of the virus.

Method
RT-qPCR; RT-PCR; Sanger sequencing
Study design
field surveillance
Transmission direction
human-to-animal
Geographic raw
Valencian Community (Spain)
Country inferred
Spain
1 records
Extraction confidence 0.90
Key finding

SARS-CoV-2 was detected by RT-qPCR in respiratory and tissue samples from a wild Eurasian river otter in Spain, representing molecular surveillance of wild mustelids for coronaviruses.

Virus
Location
Supporting text

We present evidence of spillover infection of wild mustelids by reporting the presence of SARS-CoV-2 in a Eurasian river otter found near a water reservoir in the Valencian Community (Spain). We detected the virus using two different commercial RTqPCR assays on RNA extracted from the nasopharynx (swabbing) and from lung tissue and mediastinal lymph node homogenates.

Method
RT-qPCR; RT-PCR; Sanger sequencing
Sample type
nasopharynx swab; lung tissue; mediastinal lymph node
Geographic raw
Valencian Community
Country inferred
Spain