Emergence of divergent Zaire ebola virus strains in Democratic Republic of the Congo in 2007 and 2008.

Gilda Grard1 Roman Biek Jean-Jacques Muyembe Tamfum Joseph Fair Nathan Wolfe Pierre Formenty Janusz Paweska Eric Leroy
Affiliations 1 institutions
  1. Centre International de Recherches Médicales de Franceville, Gabon. [email protected]

Abstract

Zaire ebolavirus was responsible for 2 outbreaks in Democratic Republic of the Congo (DRC), in 1976 and 1995. The virus reemerged in DRC 12 years later, causing 2 successive outbreaks in the Luebo region, Kasai Occidental province, in 2007 and 2008. Viruses of each outbreak were isolated and the full-length genomes were characterized. Phylogenetic analysis was then undertaken to characterize the relationships with previously described viruses. The 2 Luebo viruses are nearly identical but are not related to lineage A viruses known in DRC or to descendants of the lineage B viruses encountered in the Gabon-Republic of the Congo area, with which they do, however, share a common ancestor. Our findings strongly suggest that the Luebo 2007 outbreak did not result from viral spread from previously identified foci but from an independent viral emergence. The previously identified epidemiological link with migratory bat species known to carry Zaire ebolavirus RNA support the hypothesis of viral spillover from this widely dispersed reservoir. The high level of similarity between the Luebo2007 and Luebo2008 viruses suggests that local wildlife populations (most likely bats) became infected and allowed local viral persistence and reemergence from year to year.

Supporting text Virus Host Location
Genetic Variation 127 Animals 1948 Communicable Diseases, Emerging 33 Democratic Republic of the Congo 13 Disease Outbreaks 170 Ebolavirus 31 Genome, Viral 317 Hemorrhagic Fever, Ebola 27 Humans 1440 Phylogeny 805

Evidence records

5 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE1084
Key finding

Zaire ebolavirus was isolated from samples collected during the 2007 and 2008 Luebo outbreaks in the Democratic Republic of the Congo.

Virus
Host
Not specified
Location
Not specified
Supporting text

Zaire ebolavirus was responsible for 2 outbreaks in Democratic Republic of the Congo (DRC), in 1976 and 1995. The virus reemerged in DRC 12 years later, causing 2 successive outbreaks in the Luebo region, Kasai Occidental province, in 2007 and 2008. Viruses of each outbreak were isolated and the full-length genomes were characterized.

Sample type
samples collected during Luebo outbreaks
Evidence type
1 records
OVE1088
Key finding

Local wildlife populations, most likely bats, were proposed to have become infected and sustained Zaire ebolavirus circulation between the Luebo 2007 and 2008 outbreaks.

Virus
Host
Location
Supporting text

The previously identified epidemiological link with migratory bat species known to carry Zaire ebolavirus RNA support the hypothesis of viral spillover from this widely dispersed reservoir. The high level of similarity between the Luebo2007 and Luebo2008 viruses suggests that local wildlife populations (most likely bats) became infected and allowed local viral persistence and reemergence from year to year.

Method
genome sequencing | phylogenetic analysis
Geographic raw
Luebo region, Kasai Occidental province, Democratic Republic of the Congo
Country inferred
COD
Transmission Evidence
2 records · 2 evidence types
Evidence type
1 records
OVE1087
Key finding

Epidemiological evidence suggests an animal-to-human spillover of Zaire ebolavirus from migratory bat species in the Democratic Republic of the Congo.

Virus
Host
Location
Supporting text

The previously identified epidemiological link with migratory bat species known to carry Zaire ebolavirus RNA support the hypothesis of viral spillover from this widely dispersed reservoir.

Method
viral RNA detection | epidemiological investigation
Study design
epidemiological linkage analysis
Transmission direction
animal-to-human
Geographic raw
Democratic Republic of the Congo
Country inferred
COD
Evidence type
1 records
OVE1086
Key finding

Zaire ebolavirus caused two successive human outbreaks in the Luebo region of the Democratic Republic of the Congo in 2007 and 2008.

Virus
Host
Location
Supporting text

Zaire ebolavirus was responsible for 2 outbreaks in Democratic Republic of the Congo (DRC), in 1976 and 1995. The virus reemerged in DRC 12 years later, causing 2 successive outbreaks in the Luebo region, Kasai Occidental province, in 2007 and 2008.

Method
virus isolation | genome sequencing | phylogenetic analysis | epidemiological investigation
Transmission direction
animal-to-human
Geographic raw
Luebo region, Kasai Occidental province, Democratic Republic of the Congo
Country inferred
COD
Outbreak time
2007 and 2008
Outbreak scale
two successive outbreaks
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE1085
Key finding

Phylogenetic analysis showed that the Luebo 2007 and 2008 Zaire ebolavirus genomes are nearly identical but distinct from previously described DRC and Gabon–Republic of the Congo lineages, indicating independent local emergence.

Virus
Host
Not specified
Location
Not specified
Supporting text

Phylogenetic analysis was then undertaken to characterize the relationships with previously described viruses. The 2 Luebo viruses are nearly identical but are not related to lineage A viruses known in DRC or to descendants of the lineage B viruses encountered in the Gabon-Republic of the Congo area, with which they do, however, share a common ancestor.

Genes or proteins
full-length genome
Analysis methods
phylogenetic analysis