Molecular characterization of genetically related co-circulating bovine viral diarrhea virus in cattle and water buffalo within mixed-herd production systems.

Eaftekhar Ahmed Rana1,2 Jully Gogoi-Tiwari1,3 Subir Sarker4 Jasim M Uddin1,5,6
Affiliations 6 institutions
  1. School of Veterinary Medicine, Murdoch University, WA 6150, Australia
  2. Department of Microbiology and Veterinary Public Health, Chattogram Veterinary and Animal Sciences University, Khulshi, Chattogram 4225, Bangladesh. Electronic address: [email protected].
  3. Centre for Biosecurity and One Health, Harry Butler Institute, Murdoch University, WA 6150, Australia. Electronic address: [email protected].
  4. Biomedical Sciences & Molecular Biology, College of Medicine and Dentistry, James Cook University, Townsville, QLD 4811, Australia. Electronic address: [email protected].
  5. Centre for Biosecurity and One Health, Harry Butler Institute, Murdoch University, WA 6150, Australia
  6. Centre for Animal Production and Health, Food Futures Institute, Murdoch University, WA 6150, Australia. Electronic address: [email protected].

Abstract

Interspecies transmission and co-circulation of BVDV among bovines occur frequently, contributing to complex epidemiological dynamics in mixed-herd environments. A cross-sectional study was conducted in mixed bovine herds in the southern region of Bangladesh. A total of 219 blood samples were collected from cattle and water-buffalo across 12 mixed herds. Serum samples were tested for BVDV-specific antibodies using Ab-ELISA, while RT-qPCR on blood to detect seropositivity and active infection, respectively. PCR-positive samples were then subjected to 5'-UTR-based sequencing to identify circulating species and subgenotypes. Biotyping was conducted using the MDBK cell line. At the herd level, the prevalence of BVDV seropositivity and active infection were 75.0% and 66.7%, respectively. At the animal level, seropositivity was 15.9% in cattle and 14.0% in buffalo, while active infection was detected at 9.5% and 7.5%, respectively. Among infected animals,18 (94.7%) were transiently infected (TI), and one calf was persistently infected (PI). Of the 19 isolates, 12 (63.2%) were classified as BVDV-1, representing eight subgenotypes (BVDV-1a, 1b, 1c, 1d, 1j, 1k, 1o, and 1p) detected in both species, indicating co-circulation and high nucleotide identity (93-100%). All BVDV-2 and HoBi-like isolates belonged to subgenotypes BVDV-2a and HoBiPeV-a, respectively. Ten isolates (10/15; 66.7%) were non-cytopathic, and five (5/15; 33.3%) were cytopathic. Stunted growth (p = 0.036) and a history of clinical diarrhoea (p = 0.032) were associated with BVDV seropositivity. At the farm level, close proximity between farms (p = 0.001), larger farm size (p = 0.034), and introduction of recently purchased animal (p = 0.034) were significantly associated with seropositivity. The co-circulation of diverse BVDV genotypes at the cattle-water buffalo interface presents challenges for control and eradication in mixed-farming systems.

Supporting text Virus Host Location
Biotypes 1 BVDV 2 Cattle 132 Genetic diversity 26 Mixed farming 1 Risk factors 41 Water-buffalo 1

Evidence records

9 total
Zoonotic Surveillance
7 records · 3 evidence types
Evidence type
1 records
OVE11125
Key finding

Bovine viral diarrhea virus (BVDV) was isolated from cattle and water-buffalo samples using the MDBK cell line, with cytopathic and non-cytopathic biotypes identified.

Virus
Host
Location
Not specified
Supporting text

Biotyping was conducted using the MDBK cell line. Of the 19 isolates, 12 (63.2%) were classified as BVDV-1, representing eight subgenotypes (BVDV-1a, 1b, 1c, 1d, 1j, 1k, 1o, and 1p) detected in both species. Ten isolates (10/15; 66.7%) were non-cytopathic, and five (5/15; 33.3%) were cytopathic.

Sample type
blood samples
Evidence type
4 records
OVE11122
Key finding

BVDV-1 RNA was detected by RT-qPCR in blood samples from cattle and water-buffalo in mixed herds in the southern region of Bangladesh, and 5'-UTR sequencing identified multiple BVDV-1 subgenotypes.

Virus
Host
Location
Supporting text

A cross-sectional study was conducted in mixed bovine herds in the southern region of Bangladesh. A total of 219 blood samples were collected from cattle and water-buffalo across 12 mixed herds. Of the 19 isolates, 12 (63.2%) were classified as BVDV-1, representing eight subgenotypes (BVDV-1a, 1b, 1c, 1d, 1j, 1k, 1o, and 1p) detected in both species.

Method
RT-qPCR | 5'-UTR sequencing
Sample type
blood samples
Geographic raw
southern region of Bangladesh
OVE11126
Key finding

Genetically related BVDV-1, BVDV-2, and HoBi-like viruses were detected in both cattle and water buffalo within mixed herds in southern Bangladesh, indicating cross-species transmission and co-circulation between these bovine hosts.

Virus
Host
Location
Supporting text

A cross-sectional study was conducted in mixed bovine herds in the southern region of Bangladesh. A total of 219 blood samples were collected from cattle and water-buffalo across 12 mixed herds. Of the 19 isolates, 12 (63.2%) were classified as BVDV-1, representing eight subgenotypes detected in both species, indicating co-circulation and high nucleotide identity (93–100%).

Method
serological testing (Ab-ELISA) | RT-qPCR | 5'-UTR sequencing | phylogenetic analysis | biotyping
Geographic raw
southern region of Bangladesh
OVE11123
Key finding

BVDV-2 RNA was detected by RT-qPCR in blood samples from cattle and water-buffalo in mixed herds in the southern region of Bangladesh, and sequencing identified subgenotype BVDV-2a.

Virus
Host
Location
Supporting text

A cross-sectional study was conducted in mixed bovine herds in the southern region of Bangladesh. A total of 219 blood samples were collected from cattle and water-buffalo across 12 mixed herds. All BVDV-2 isolates belonged to subgenotype BVDV-2a.

Method
RT-qPCR | 5'-UTR sequencing
Sample type
blood samples
Geographic raw
southern region of Bangladesh
OVE11124
Key finding

HoBi-like pestivirus RNA was detected by RT-qPCR in blood samples from cattle and water-buffalo in mixed herds in the southern region of Bangladesh, confirmed by sequencing as subgenotype HoBiPeV-a.

Virus
Host
Location
Supporting text

A cross-sectional study was conducted in mixed bovine herds in the southern region of Bangladesh. A total of 219 blood samples were collected from cattle and water-buffalo across 12 mixed herds. All HoBi-like isolates belonged to subgenotype HoBiPeV-a.

Method
RT-qPCR | 5'-UTR sequencing
Sample type
blood samples
Geographic raw
southern region of Bangladesh
Evidence type
2 records
OVE11120
Key finding

BVDV-specific antibodies were detected in 15.9% of cattle serum samples from mixed herds in southern Bangladesh.

Virus
Host
Location
Not specified
Supporting text

Serum samples were tested for BVDV-specific antibodies using Ab-ELISA ... At the animal level, seropositivity was 15.9% in cattle.

Method
Ab-ELISA
Sample type
serum samples
OVE11121
Key finding

BVDV-specific antibodies were detected in 14.0% of water buffalo serum samples from mixed herds in southern Bangladesh.

Virus
Host
Location
Not specified
Supporting text

Serum samples were tested for BVDV-specific antibodies using Ab-ELISA ... seropositivity was 14.0% in buffalo.

Method
Ab-ELISA
Sample type
serum samples
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE11127
Key finding

Phylogenetic analysis of 5'-UTR sequences revealed eight BVDV-1 subgenotypes co-circulating in cattle and water buffalo in Bangladesh with high nucleotide identity.

Virus
Host
Location
Not specified
Supporting text

Of the 19 isolates, 12 (63.2%) were classified as BVDV-1, representing eight subgenotypes (BVDV-1a, 1b, 1c, 1d, 1j, 1k, 1o, and 1p) detected in both species, indicating co-circulation and high nucleotide identity (93-100%).

Genes or proteins
5'-UTR
Analysis methods
sequencing | phylogenetic classification based on 5'-UTR
OVE11128
Key finding

Sequencing showed that all BVDV-2 isolates belonged to subgenotype BVDV-2a and all HoBi-like isolates to HoBiPeV-a, indicating distinct evolutionary lineages.

Virus
Host
Not specified
Location
Not specified
Supporting text

All BVDV-2 and HoBi-like isolates belonged to subgenotypes BVDV-2a and HoBiPeV-a, respectively.

Genes or proteins
5'-UTR
Analysis methods
sequencing | phylogenetic classification based on 5'-UTR