Four lineages of adenoviruses identified in raptors sampled in Spain.

Shawnpreet Sahnan1 Virginia Morandini2 Miguel Ferrer3 Alejandro Onrubia4 Carlos Torralvo4 Győző L Kaján5 Balázs Harrach5 Arvind Varsani6,7 Simona Kraberger1
Affiliations 7 institutions
  1. The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA.
  2. Estación Biológica de Doñana, CSIC, Avda. Américo Vespucio s/n, Sevilla, 41092, Spain. Electronic address: [email protected].
  3. Estación Biológica de Doñana, CSIC, Avda. Américo Vespucio s/n, Sevilla, 41092, Spain.
  4. Fundación Migres, Tarifa, 11380, Spain.
  5. HUN-REN Veterinary Medical Research Institute, Budapest, 1143, Hungary.
  6. The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA
  7. Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, 7925, South Africa. Electronic address: [email protected].

Abstract

Adenoviruses infect a wide range of vertebrate species from fish to humans, including an especially large number of avian species. This study utilized viral metagenomic workflow coupled with targeted PCR to identify and characterize adenoviruses from cloacal swabs collected from 50 black kites (Milvus migrans), 11 ospreys (Pandion haliaetus), and 35 common kestrels (Falco tinnunculus) sampled in Spain. A total of eleven adenoviral genomes were determined from black kites (n = 8) and common kestrels (n = 3). Amino acid pairwise comparison of the DNA polymerase protein coupled with phylogenetic analysis shows that these viruses fall into four adenovirus lineages: two in the genus Aviadenovirus (raptor adenovirus 2 and 3) and two in the genus Siadenovirus (raptor adenovirus 1 and 4). The genomes of raptor adenovirus 1 and raptor adenovirus 2 belong to the classified species Siadenovirus raptoris and Aviadenovirus falconis, respectively, whereas raptor adenovirus 3 and 4 represent putative new species. This study expands the known host range of raptor-infecting viruses in the species Siadenovirus raptoris and Aviadenovirus falconis to include black kites and common kestrels, respectively. We also expand on the diversity knowledge of adenoviruses in black kites.

Supporting text Virus Host Location
Aviadenovirus 2 Black kite 1 Common kestrel 1 Falco tinnunculus 1 Milvus migrans 1 Siadenovirus 1

Evidence records

5 total
Zoonotic Surveillance
3 records · 2 evidence types
Evidence type
1 records
OVE11277
Key finding

Adenoviral genomes were detected in cloacal swabs from black kites and common kestrels sampled in Spain using metagenomic and PCR methods.

Virus
Host
Location
Supporting text

This study utilized viral metagenomic workflow coupled with targeted PCR to identify and characterize adenoviruses from cloacal swabs collected from 50 black kites (Milvus migrans), 11 ospreys (Pandion haliaetus), and 35 common kestrels (Falco tinnunculus) sampled in Spain.

Method
viral metagenomic workflow | targeted PCR
Sample type
cloacal swabs
Geographic raw
Spain
Country inferred
ESP
Evidence type
2 records
OVE11280
Key finding

Siadenovirus raptoris was detected in black kites sampled in Spain, expanding the known host range of this raptor adenovirus species.

Virus
Host
Location
Supporting text

This study utilized viral metagenomic workflow coupled with targeted PCR to identify and characterize adenoviruses from cloacal swabs collected from 50 black kites (Milvus migrans), 11 ospreys (Pandion haliaetus), and 35 common kestrels (Falco tinnunculus) sampled in Spain. This study expands the known host range of raptor-infecting viruses in the species Siadenovirus raptoris and Aviadenovirus falconis to include black kites and common kestrels, respectively.

Method
viral metagenomic workflow | targeted PCR | phylogenetic analysis
Sample type
cloacal swabs
Geographic raw
Spain
Country inferred
ESP
OVE11281
Key finding

Aviadenovirus falconis was identified in common kestrels sampled in Spain, extending its host associations within raptors.

Virus
Host
Location
Supporting text

This study utilized viral metagenomic workflow coupled with targeted PCR to identify and characterize adenoviruses from cloacal swabs collected from 50 black kites (Milvus migrans), 11 ospreys (Pandion haliaetus), and 35 common kestrels (Falco tinnunculus) sampled in Spain. This study expands the known host range of raptor-infecting viruses in the species Siadenovirus raptoris and Aviadenovirus falconis to include black kites and common kestrels, respectively.

Method
viral metagenomic workflow | targeted PCR | phylogenetic analysis
Sample type
cloacal swabs
Geographic raw
Spain
Country inferred
ESP
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE11278
Key finding

Phylogenetic analysis of DNA polymerase sequences grouped raptor adenoviruses 1–4 into four lineages, two within Aviadenovirus and two within Siadenovirus, in raptors sampled in Spain.

Virus
Host
Location
Not specified
Supporting text

Amino acid pairwise comparison of the DNA polymerase protein coupled with phylogenetic analysis shows that these viruses fall into four adenovirus lineages: two in the genus Aviadenovirus (raptor adenovirus 2 and 3) and two in the genus Siadenovirus (raptor adenovirus 1 and 4). This study utilized viral metagenomic workflow coupled with targeted PCR to identify and characterize adenoviruses from cloacal swabs collected from 50 black kites (Milvus migrans), 11 ospreys (Pandion haliaetus), and 35 common kestrels (Falco tinnunculus) sampled in Spain.

Genes or proteins
DNA polymerase
Analysis methods
amino acid pairwise comparison | phylogenetic analysis
OVE11279
Key finding

Genomic comparison indicates that raptor adenoviruses 3 and 4 represent putative new species distinct from classified Aviadenovirus and Siadenovirus members detected in black kites and common kestrels.

Virus
Host
Location
Not specified
Supporting text

The genomes of raptor adenovirus 1 and raptor adenovirus 2 belong to the classified species Siadenovirus raptoris and Aviadenovirus falconis, respectively, whereas raptor adenovirus 3 and 4 represent putative new species. A total of eleven adenoviral genomes were determined from black kites (n = 8) and common kestrels (n = 3).

Analysis methods
genomic comparison | phylogenetic analysis