Molecular recognition of human ephrinB2 cell surface receptor by an emergent African henipavirus.

Benhur Lee1,2 Olivier Pernet3 Asim A Ahmed4,5 Antra Zeltina6 Shannon M Beaty1 Thomas A Bowden7
Affiliations 7 institutions
  1. Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029
  2. [email protected] [email protected].
  3. Department of Microbiology, Immunology, and Molecular Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095
  4. Division of Infectious Disease, Boston Children's Hospital, Boston, MA 02115
  5. and.
  6. Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, United Kingdom.
  7. Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, United Kingdom [email protected] [email protected].

Abstract

The discovery of African henipaviruses (HNVs) related to pathogenic Hendra virus (HeV) and Nipah virus (NiV) from Southeast Asia and Australia presents an open-ended health risk. Cell receptor use by emerging African HNVs at the stage of host-cell entry is a key parameter when considering the potential for spillover and infection of human populations. The attachment glycoprotein from a Ghanaian bat isolate (GhV-G) exhibits <30% sequence identity with Asiatic NiV-G/HeV-G. Here, through functional and structural analysis of GhV-G, we show how this African HNV targets the same human cell-surface receptor (ephrinB2) as the Asiatic HNVs. We first characterized this virus-receptor interaction crystallographically. Compared with extant HNV-G-ephrinB2 structures, there was significant structural variation in the six-bladed β-propeller scaffold of the GhV-G receptor-binding domain, but not the Greek key fold of the bound ephrinB2. Analysis revealed a surprisingly conserved mode of ephrinB2 interaction that reflects an ongoing evolutionary constraint among geographically distal and phylogenetically divergent HNVs to maintain the functionality of ephrinB2 recognition during virus-host entry. Interestingly, unlike NiV-G/HeV-G, we could not detect binding of GhV-G to ephrinB3. Comparative structure-function analysis further revealed several distinguishing features of HNV-G function: a secondary ephrinB2 interaction site that contributes to more efficient ephrinB2-mediated entry in NiV-G relative to GhV-G and cognate residues at the very C terminus of GhV-G (absent in Asiatic HNV-Gs) that are vital for efficient receptor-induced fusion, but not receptor binding per se. These data provide molecular-level details for evaluating the likelihood of African HNVs to spill over into human populations.

Supporting text Virus Host Location
emerging virus 2 glycoprotein 11 henipavirus 30 structure 6 viral attachment 1 Ephrin-B2 14 Henipavirus 18 Viral Proteins 152 Virus Internalization 100 Ephrin-B3 6 HEK293 Cells 61 Henipavirus Infections 65 Humans 1440 Protein Structure, Quaternary 5 Protein Structure, Secondary 11 Protein Structure, Tertiary 29 Structure-Activity Relationship 9

Evidence records

2 total
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE1982
Key finding

The Ghanaian bat isolate GhV-G uses the human cell-surface receptor ephrinB2 for entry, similar to Nipah virus and Hendra virus.

Virus
Host
Location
Not specified
Supporting text

Here, through functional and structural analysis of GhV-G, we show how this African HNV targets the same human cell-surface receptor (ephrinB2) as the Asiatic HNVs.

Method
functional analysis | structural characterization | crystallography
Receptors
ephrinB2
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE1986
Key finding

Comparative structural and sequence analyses show that African and Asiatic henipaviruses maintain a conserved ephrinB2 receptor‑recognition mode, indicating an evolutionary constraint across divergent lineages.

Virus
Host
Location
Not specified
Supporting text

Here, through functional and structural analysis of GhV-G, we show how this African HNV targets the same human cell-surface receptor (ephrinB2) as the Asiatic HNVs. Analysis revealed a surprisingly conserved mode of ephrinB2 interaction that reflects an ongoing evolutionary constraint among geographically distal and phylogenetically divergent HNVs to maintain the functionality of ephrinB2 recognition during virus-host entry.

Genes or proteins
attachment glycoprotein G
Analysis methods
comparative structural analysis | sequence analysis | phylogenetic comparison