Transmission of H7N9 Influenza Viruses with a Polymorphism at PB2 Residue 627 in Chickens and Ferrets.

Geraldine S M Luk1 Connie Y H Leung2 Sin Fun Sia2 Ka-Tim Choy2 Jie Zhou2 Candy C K Ho2 Peter P H Cheung2 Elaine F Lee1 Chris K L Wai1 Pamela C H Li1 Sin-Ming Ip1 Leo L M Poon2 William G Lindsley3 Malik Peiris4 Hui-Ling Yen4
Affiliations 4 institutions
  1. Agriculture, Fisheries and Conservation Department, The Government of Hong Kong SAR, Hong Kong.
  2. School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
  3. Allergy and Clinical Immunology Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, West Virginia, USA.
  4. School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong [email protected] [email protected].

Abstract

Poultry exposure is a major risk factor for human H7N9 zoonotic infections, for which the mode of transmission remains unclear. We studied the transmission of genetically related poultry and human H7N9 influenza viruses differing by four amino acids, including the host determinant PB2 residue 627. A/Silkie chicken/HK/1772/2014 (SCk1772) and A/HK/3263/14 (HK3263) replicated to comparable titers in chickens, with superior oropharyngeal over cloacal shedding; both viruses transmitted efficiently among chickens via direct contact but inefficiently via the airborne route. Interspecies transmission via the airborne route was observed for ferrets exposed to the SCk1772- or HK3263-infected chickens, while low numbers of copies of influenza viral genome were detected in the air, predominantly at particle sizes larger than 4 μm. In ferrets, the human isolate HK3263 replicated to higher titers and transmitted more efficiently via direct contact than SCk1772. We monitored "intrahost" and "interhost" adaptive changes at PB2 residue 627 during infection and transmission of the Sck1772 that carried E627 and HK3263 that carried V/K/E polymorphism at 60%, 20%, and 20%, respectively. For SCk1772, positive selection for K627 over E627 was observed in ferrets during the chicken-to-ferret or ferret-to-ferret transmission. For HK3263 that contained V/K/E polymorphism, mixed V627 and E627 genotypes were transmitted among chickens while either V627 or K627 was transmitted to ferrets with a narrow transmission bottleneck. Overall, our results suggest direct contact as the main mode for H7N9 transmission and identify the PB2-V627 genotype with uncompromised fitness and transmissibility in both avian and mammalian species. We studied the modes of H7N9 transmission, as this information is crucial for developing effective control measures for prevention. Using chicken (SCk1772) and human (HK3263) H7N9 isolates that differed by four amino acids, including the host determinant PB2 residue 627, we observed that both viruses transmitted efficiently among chickens via direct contact but inefficiently via the airborne route. Chicken-to-ferret transmission via the airborne route was observed, along with the detection of viral genome in the air at low copy numbers. In ferrets, HK3263 transmitted more efficiently than SCk1772 via direct contact. During the transmission of SCk1772 that contained E and HK3263 that contained V/K/E polymorphism at PB2 residue 627, positive selections of E627 and K627 were observed in chickens and ferrets, respectively. In addition, PB2-V627 was transmitted and stably maintained in both avian and mammalian species. Our results support applying intervention strategies that minimize direct and indirect contact at the poultry markets during epidemics.

Supporting text Virus Host Location
Polymorphism, Genetic 9 Air Microbiology 5 Animals 1948 Chickens 146 Ferrets 79 Genome, Viral 317 Host-Pathogen Interactions 55 Humans 1440 Influenza A Virus, H7N9 Subtype 87 Influenza in Birds 341 Influenza, Human 286 Orthomyxoviridae Infections 228 Poultry Diseases 74 RNA, Viral 193 RNA-Dependent RNA Polymerase 49 Species Specificity 84 Viral Proteins 152 Zoonoses 397 PB2 protein, Influenzavirus A 27

Evidence records

10 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE2137
Key finding

Influenza H7N9 viral genome was detected in airborne particles during chicken-to-ferret transmission experiments.

Virus
Host
Not specified
Location
Not specified
Supporting text

low numbers of copies of influenza viral genome were detected in the air, predominantly at particle sizes larger than 4 μm

Method
viral genome detection | quantitative PCR
Sample type
airborne particles | air samples
Experimental Infection
6 records · 1 evidence types
Evidence type
6 records
OVE2131
Key finding

A/Silkie chicken/HK/1772/2014 (SCk1772) transmitted efficiently among chickens via direct contact but inefficiently via the airborne route.

Virus
Host
Location
Not specified
Supporting text

A/Silkie chicken/HK/1772/2014 (SCk1772) and A/HK/3263/14 (HK3263) replicated to comparable titers in chickens, with superior oropharyngeal over cloacal shedding; both viruses transmitted efficiently among chickens via direct contact but inefficiently via the airborne route.

Method
animal transmission model | direct contact exposure | airborne exposure | viral shedding assessment
Experimental system
chicken direct-contact and airborne transmission model
OVE2132
Key finding

A/HK/3263/14 (HK3263) transmitted efficiently among chickens via direct contact but inefficiently via the airborne route.

Virus
Host
Location
Not specified
Supporting text

A/Silkie chicken/HK/1772/2014 (SCk1772) and A/HK/3263/14 (HK3263) replicated to comparable titers in chickens, with superior oropharyngeal over cloacal shedding; both viruses transmitted efficiently among chickens via direct contact but inefficiently via the airborne route.

Method
animal transmission model | direct contact exposure | airborne exposure | viral shedding assessment
Experimental system
chicken direct-contact and airborne transmission model
OVE2133
Key finding

SCk1772-infected chickens transmitted H7N9 virus to ferrets via the airborne route.

Virus
Host
Location
Not specified
Supporting text

Interspecies transmission via the airborne route was observed for ferrets exposed to the SCk1772- or HK3263-infected chickens

Method
animal transmission model | airborne exposure
Experimental system
chicken-to-ferret airborne transmission model
OVE2134
Key finding

HK3263-infected chickens transmitted H7N9 virus to ferrets via the airborne route.

Virus
Host
Location
Not specified
Supporting text

Interspecies transmission via the airborne route was observed for ferrets exposed to the SCk1772- or HK3263-infected chickens

Method
animal transmission model | airborne exposure
Experimental system
chicken-to-ferret airborne transmission model
OVE2135
Key finding

HK3263 transmitted more efficiently between ferrets via direct contact than SCk1772.

Virus
Host
Location
Not specified
Supporting text

In ferrets, the human isolate HK3263 replicated to higher titers and transmitted more efficiently via direct contact than SCk1772

Method
animal transmission model | direct contact exposure
Experimental system
ferret direct-contact transmission model
OVE2136
Key finding

SCk1772 transmitted less efficiently between ferrets via direct contact than HK3263.

Virus
Host
Location
Not specified
Supporting text

In ferrets, the human isolate HK3263 replicated to higher titers and transmitted more efficiently via direct contact than SCk1772

Method
animal transmission model | direct contact exposure
Experimental system
ferret direct-contact transmission model
Functional Mechanism
3 records · 1 evidence types
Evidence type
3 records
OVE2138
Key finding

During transmission of the H7N9 virus SCk1772 in ferrets, PB2-K627 was positively selected over PB2-E627.

Virus
Host
Not specified
Location
Not specified
Supporting text

For SCk1772, positive selection for K627 over E627 was observed in ferrets during the chicken-to-ferret or ferret-to-ferret transmission.

Genes or proteins
PB2
Mutations
K627 | E627
Mechanism types
host-range expansion | transmission fitness | replication adaptation
OVE2139
Key finding

In the H7N9 virus HK3263, mixed PB2-V627 and PB2-E627 genotypes transmitted among chickens, whereas ferrets transmitted either PB2-V627 or PB2-K627 under a narrow transmission bottleneck.

Virus
Host
Not specified
Location
Not specified
Supporting text

For HK3263 that contained V/K/E polymorphism, mixed V627 and E627 genotypes were transmitted among chickens while either V627 or K627 was transmitted to ferrets with a narrow transmission bottleneck.

Genes or proteins
PB2
Mutations
V627 | K627 | E627
Mechanism types
host-range expansion | transmission fitness
OVE2140
Key finding

The PB2-V627 genotype in H7N9 showed uncompromised fitness and transmissibility in both avian and mammalian species.

Virus
Host
Not specified
Location
Not specified
Supporting text

Overall, our results suggest direct contact as the main mode for H7N9 transmission and identify the PB2-V627 genotype with uncompromised fitness and transmissibility in both avian and mammalian species.

Genes or proteins
PB2
Mutations
V627
Mechanism types
transmission fitness | host-range expansion