Isolation and characterization of adenoviruses persistently shed from the gastrointestinal tract of non-human primates.

Soumitra Roy1 Luk H Vandenberghe Sergey Kryazhimskiy Rebecca Grant Roberto Calcedo Xin Yuan Martin Keough Arbans Sandhu Qiang Wang C Angelica Medina-Jaszek Joshua B Plotkin James M Wilson
Affiliations 1 institutions
  1. Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Abstract

Adenoviruses are important human pathogens that have been developed as vectors for gene therapies and genetic vaccines. Previous studies indicated that human infections with adenoviruses are self-limiting in immunocompetent hosts with evidence of some persistence in adenoid tissue. We sought to better understand the natural history of adenovirus infections in various non-human primates and discovered that healthy populations of great apes (chimpanzees, bonobos, gorillas, and orangutans) and macaques shed substantial quantities of infectious adenoviruses in stool. Shedding in stools from asymptomatic humans was found to be much less frequent, comparable to frequencies reported before. We purified and fully sequenced 30 novel adenoviruses from apes and 3 novel adenoviruses from macaques. Analyses of the new ape adenovirus sequences (as well as the 4 chimpanzee adenovirus sequences we have previously reported) together with 22 complete adenovirus genomes available from GenBank revealed that (a) the ape adenoviruses could clearly be classified into species corresponding to human adenovirus species B, C, and E, (b) there was evidence for intraspecies recombination between adenoviruses, and (c) the high degree of phylogenetic relatedness of adenoviruses across their various primate hosts provided evidence for cross species transmission events to have occurred in the natural history of B and E viruses. The high degree of asymptomatic shedding of live adenovirus in non-human primates and evidence for zoonotic transmissions warrants caution for primate handling and housing. Furthermore, the presence of persistent and/or latent adenovirus infections in the gut should be considered in the design and interpretation of human and non-human primate studies with adenovirus vectors.

Supporting text Virus Host Location
Adenoviridae 13 Adenoviridae Infections 17 Africa 16 Animals 1948 Animals, Zoo 18 Feces 113 Gastrointestinal Tract 3 Genes, Viral 37 Hominidae 10 Macaca 6 Molecular Sequence Data 160 Phylogeny 805 Polymerase Chain Reaction 38 Recombination, Genetic 59

Evidence records

5 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE706
Key finding

Infectious adenoviruses were successfully isolated and purified from stool samples of healthy great apes and macaques.

Virus
Host
Location
Not specified
Supporting text

We discovered that healthy populations of great apes (chimpanzees, bonobos, gorillas, and orangutans) and macaques shed substantial quantities of infectious adenoviruses in stool.

Sample type
stool samples
Evidence type
1 records
OVE710
Key finding

Non-human primates maintain persistent and asymptomatic gastrointestinal adenovirus infections, indicating ecological maintenance of adenoviruses in primate populations.

Virus
Host
Location
Not specified
Supporting text

The high degree of asymptomatic shedding of live adenovirus in non-human primates and evidence for zoonotic transmissions warrants caution for primate handling and housing.

Method
virus isolation | genomic sequencing
Sample type
stool
Genomic Evolution
3 records · 2 evidence types
Evidence type
1 records
OVE708
Key finding

Genomic analyses identified intraspecies recombination among adenoviruses isolated from non-human primates.

Virus
Host
Not specified
Location
Not specified
Supporting text

(b) there was evidence for intraspecies recombination between adenoviruses

Event type
recombination
Evidence type
2 records
OVE707
Key finding

Phylogenetic analysis indicated that ape adenoviruses cluster into species corresponding to human adenovirus species B, C, and E.

Virus
Host
Location
Not specified
Supporting text

Analyses of the new ape adenovirus sequences ... revealed that (a) the ape adenoviruses could clearly be classified into species corresponding to human adenovirus species B, C, and E.

Analysis methods
phylogenetic analysis
OVE709
Key finding

Phylogenetic analysis showed that adenoviruses of species B and E were closely related across different non-human primate hosts, indicating cross-species transmission among primates.

Virus
Host
Location
Not specified
Supporting text

The high degree of phylogenetic relatedness of adenoviruses across their various primate hosts provided evidence for cross species transmission events to have occurred in the natural history of B and E viruses.

Analysis methods
genomic sequencing | phylogenetic comparison