Literature detail

Complete genome analyses of G4P[6] rotavirus detected in Argentinean children with diarrhoea provides evidence of interspecies transmission from swine.

J I Degiuseppe1 J C Beltramino A Millán J A Stupka G I Parra
Affiliations 1 institutions
  1. Instituto Nacional de Enfermedades Infecciosas (ANLIS 'Dr Carlos G. Malbrán'), Buenos Aires, Argentina. [email protected]
PMID 23586655 2013 Clin Microbiol Infect eng ppublish
PubMed DOI Browse context

Article

Publication summary

Rotaviruses are dynamic pathogens that have been shown to infect multiple species. In 2006, two G4P[6] rotavirus strains with porcine characteristics were detected in Santa Fe, Argentina. To further characterize and determine the origin of these strains, nearly the full length of their genome was sequenced. While most of the genome segments were from porcine origin, the two strains grouped in different phylogenetic clusters in five out of the 11 genes, suggesting two independent interspecies transmission events. This study expands our knowledge of G4 rotavirus and reinforces the use of complete genome analyses as a key tool for diversity and evolution mechanicisms.

Argentina G4P[6] interspecies transmission porcine-like strains rotavirus Animals Argentina Cluster Analysis Female Gastroenteritis Genotype Humans Infant Male Molecular Epidemiology Molecular Sequence Data Phylogeny RNA, Viral

Structured evidence records

Evidence records

2 total
1 records
Extraction confidence 0.90
Key finding

Complete genome sequencing and phylogenetic analysis showed that G4P[6] rotavirus strains detected in Argentinean children had predominantly porcine-origin genome segments, forming different phylogenetic clusters indicative of distinct interspecies transmission events from swine.

Virus
Location
Not specified
Supporting text

Nearly the full length of their genome was sequenced. While most of the genome segments were from porcine origin, the two strains grouped in different phylogenetic clusters in five out of the 11 genes, suggesting two independent interspecies transmission events.

Genes or proteins
genome segments
Analysis methods
complete genome sequencing; phylogenetic analysis
1 records
Extraction confidence 0.95
Key finding

Two G4P[6] rotavirus strains of porcine origin were detected in Argentinean children, indicating swine-to-human transmission.

Virus
Location
Supporting text

In 2006, two G4P[6] rotavirus strains with porcine characteristics were detected in Santa Fe, Argentina...provides evidence of interspecies transmission from swine.

Method
sequencing; phylogenetic analysis
Study design
genomic analysis
Transmission direction
animal-to-human
Geographic raw
Santa Fe, Argentina
Country inferred
Argentina