Complete genome analyses of G4P[6] rotavirus detected in Argentinean children with diarrhoea provides evidence of interspecies transmission from swine.

J I Degiuseppe1 J C Beltramino A Millán J A Stupka G I Parra
Affiliations 1 institutions
  1. Instituto Nacional de Enfermedades Infecciosas (ANLIS 'Dr Carlos G. Malbrán'), Buenos Aires, Argentina. [email protected]

Abstract

Rotaviruses are dynamic pathogens that have been shown to infect multiple species. In 2006, two G4P[6] rotavirus strains with porcine characteristics were detected in Santa Fe, Argentina. To further characterize and determine the origin of these strains, nearly the full length of their genome was sequenced. While most of the genome segments were from porcine origin, the two strains grouped in different phylogenetic clusters in five out of the 11 genes, suggesting two independent interspecies transmission events. This study expands our knowledge of G4 rotavirus and reinforces the use of complete genome analyses as a key tool for diversity and evolution mechanicisms.

Supporting text Virus Host Location
Argentina 5 G4P[6] 3 interspecies transmission 51 porcine-like strains 1 rotavirus 66 Animals 1948 Argentina 5 Cluster Analysis 31 Female 289 Gastroenteritis 14 Genotype 137 Humans 1440 Infant 26 Male 224 Molecular Epidemiology 21 Molecular Sequence Data 160 Phylogeny 805 RNA, Viral 193 Rotavirus 65 Rotavirus Infections 61 Sequence Analysis, DNA 113 Swine 258 Zoonoses 397

Evidence records

2 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE1384
Key finding

Two G4P[6] rotavirus strains with porcine characteristics were detected in human diarrhoeal samples from Argentinean children in Santa Fe, Argentina.

Virus
Host
Location
Supporting text

In 2006, two G4P[6] rotavirus strains with porcine characteristics were detected in Santa Fe, Argentina.

Method
genome sequencing
Sample type
diarrhoeal samples
Geographic raw
Santa Fe, Argentina
Country inferred
ARG
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE1385
Key finding

Complete genome phylogenetic analysis of two G4P[6] rotavirus strains from Argentinean children demonstrated porcine-origin genome segments and distinct phylogenetic clustering, indicating independent interspecies transmission events from swine.

Virus
Host
Location
Not specified
Supporting text

In 2006, two G4P[6] rotavirus strains with porcine characteristics were detected in Santa Fe, Argentina. While most of the genome segments were from porcine origin, the two strains grouped in different phylogenetic clusters in five out of the 11 genes, suggesting two independent interspecies transmission events.

Genes or proteins
five out of the 11 genes | complete genome
Analysis methods
complete genome sequencing | phylogenetic analysis