Possible host-adaptation of SARS-CoV-2 due to improved ACE2 receptor binding in mink.

Matthijs R A Welkers1 Alvin X Han1 Chantal B E M Reusken2 Dirk Eggink1
Affiliations 2 institutions
  1. Department of Medical Microbiology & Infection Prevention, Amsterdam University Medical Centers, location AMC, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands.
  2. Centre for Infectious Disease Control, National Institute for Public Health and the Environment, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, The Netherlands.

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections on mink farms are increasingly observed in several countries, leading to the massive culling of animals on affected farms. Recent studies showed multiple (anthropo)zoonotic transmission events between humans and mink on these farms. Mink-derived SARS-CoV-2 sequences from The Netherlands and Denmark contain multiple substitutions in the S protein receptor binding domain (RBD). Molecular modeling showed that these substitutions increase the mean binding energy, suggestive of potential adaptation of the SARS-CoV-2 S protein to the mink angiotensin-converting enzyme 2 (ACE2) receptor. These substitutions could possibly also impact human ACE2 binding affinity as well as humoral immune responses directed to the RBD region of the SARS-CoV-2 S protein in humans. We wish to highlight these observations to raise awareness and urge for the continued surveillance of mink (and other animal)-related infections.

Supporting text Virus Host Location
host adaptation 20 humoral immunity 1 mink 58 protein structure 1 public health 37 SARS-CoV-2 550

Evidence records

1 total
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE4470
Key finding

Mink-derived SARS-CoV-2 genomes from The Netherlands and Denmark show multiple amino acid substitutions in the spike protein receptor binding domain, indicating host-associated evolution.

Virus
Host
Location
Not specified
Supporting text

Mink-derived SARS-CoV-2 sequences from The Netherlands and Denmark contain multiple substitutions in the S protein receptor binding domain (RBD).

Genes or proteins
S protein | receptor binding domain (RBD)
Analysis methods
comparative genomic analysis