Literature detail

The SARS-CoV-2 Y453F mink variant displays a pronounced increase in ACE-2 affinity but does not challenge antibody neutralization.

Rafael Bayarri-Olmos1 Anne Rosbjerg2,3 Laust Bruun Johnsen4 Charlotte Helgstrand4 Theresa Bak-Thomsen4 Peter Garred1 Mikkel-Ole Skjoedt2,5
Affiliations 5 institutions
  1. Laboratory of Molecular Medicine, Department of Clinical Immunology, University Hospital of Copenhagen, Copenhagen, Denmark.
  2. Laboratory of Molecular Medicine, Department of Clinical Immunology, University Hospital of Copenhagen, Copenhagen, Denmark
  3. Institute of Immunology and Microbiology, University of Copenhagen, Copenhagen, Denmark.
  4. Novo Nordisk A/S, Måløv, Denmark.
  5. Institute of Immunology and Microbiology, University of Copenhagen, Copenhagen, Denmark. Electronic address: [email protected].
PMID 33716040 2021 J Biol Chem eng ppublish
PubMed DOI Browse context

Article

Publication summary

Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 from humans to animals has been reported for many domesticated species, including farmed minks. The identification of novel spike gene mutations appearing in minks has raised major concerns about potential immune evasion and challenges for the global vaccine strategy. One genetic variant, known as "cluster five," arose among farmed minks in Denmark and resulted in a complete shutdown of the world's largest mink production. However, the functional properties of this new variant are not established. Here we present functional data on the cluster-five variant, which contains a mutation resulting in a Y453F residue change in the receptor-binding domain (RBD) of the spike protein. Using an ELISA-based angiotensin-converting enzyme-2/RBD inhibition assay, we show that the Y453F variant does not decrease established humoral immunity from previously infected individuals or affect the neutralizing antibody response in a vaccine mouse model based on the original Wuhan strain RBD or spike as antigens. However, biolayer interferometry analysis demonstrates that it binds the human angiotensin-converting enzyme-2 receptor with a 4-fold higher affinity than the original strain, suggesting an enhanced transmission capacity and a possible challenge for viral control. These results also indicate that the rise in the frequency of the cluster-five variant in mink farms might be a result of the fitness advantage conferred by the receptor adaptation rather than evading immune responses.

ACE-2 antibodies immunology mutant RBD receptor interaction receptor structure–function RNA virus SARS-CoV-2 Virology Pandemics Amino Acid Substitution Angiotensin-Converting Enzyme 2 Animals Antibodies, Neutralizing Antibodies, Viral Convalescence COVID-19

Structured evidence records

Evidence records

3 total
1 records
Extraction confidence 0.95
Key finding

The SARS-CoV-2 cluster-five variant carrying the Y453F mutation in the spike RBD displays markedly increased affinity for the human ACE2 receptor, consistent with receptor adaptation during mink-associated transmission.

Virus
Host
Not specified
Location
Not specified
Supporting text

Biolayer interferometry analysis demonstrates that the Y453F variant binds the human angiotensin-converting enzyme-2 receptor with a 4-fold higher affinity than the original strain, suggesting an enhanced transmission capacity and a possible challenge for viral control.

Genes or proteins
spike; RBD
Receptors
ACE2
Mutations
Y453F
Mechanism types
receptor_binding; cell_entry; transmission_fitness
1 records
Extraction confidence 0.95
Key finding

The SARS-CoV-2 Y453F mink variant shows a fourfold increase in binding affinity to the human ACE-2 receptor compared with the original strain.

Virus
Location
Not specified
Supporting text

Biolayer interferometry analysis demonstrates that it binds the human angiotensin-converting enzyme-2 receptor with a 4-fold higher affinity than the original strain, suggesting an enhanced transmission capacity and a possible challenge for viral control.

Method
biolayer interferometry; ELISA-based ACE-2/RBD inhibition assay
Receptors
ACE-2
1 records
Extraction confidence 0.90
Key finding

SARS-CoV-2 was transmitted from humans to farmed minks.

Virus
Location
Supporting text

Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 from humans to animals has been reported for many domesticated species, including farmed minks.

Study design
unknown
Transmission direction
human-to-animal
Geographic raw
Denmark
Country inferred
Denmark