SARS-CoV-2 variants of concern alpha, beta, gamma and delta have extended ACE2 receptor host ranges.

Nazia Thakur1,2 Giulia Gallo1 Joseph Newman1 Thomas P Peacock3 Luca Biasetti4 Catherine N Hall4 Edward Wright5 Wendy Barclay3 Dalan Bailey1
Affiliations 5 institutions
  1. The Pirbright Institute, Guildford, Surrey, GU24 0NF, UK.
  2. Nuffield Department of Medicine, The Jenner Institute, Oxford, OX3 7DQ, UK.
  3. Department of Infectious Disease, Imperial College - London, W2 1PG, UK.
  4. School of Psychology and Neuroscience, University of Sussex, Falmer, BN1 9QH, UK.
  5. Viral Pseudotype Unit, School of Life Sciences, University of Sussex, Falmer, BN1 9QG, UK.

Abstract

Following the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in PR China in late 2019 a number of variants have emerged, with two of these - alpha and delta - subsequently growing to global prevalence. One characteristic of these variants are changes within the spike protein, in particular the receptor-binding domain (RBD). From a public health perspective, these changes have important implications for increased transmissibility and immune escape; however, their presence could also modify the intrinsic host range of the virus. Using viral pseudotyping, we examined whether the variants of concern (VOCs) alpha, beta, gamma and delta have differing host angiotensin-converting enzyme 2 (ACE2) receptor usage patterns, focusing on a range of relevant mammalian ACE2 proteins. All four VOCs were able to overcome a previous restriction for mouse ACE2, with demonstrable differences also seen for individual VOCs with rat, ferret or civet ACE2 receptors, changes that we subsequently attributed to N501Y and E484K substitutions within the spike RBD.

Supporting text Virus Host Location
coronavirus 195 COVID-19 467 host range 29 sarbecovirus 19 SARS-CoV-2 550 zoonosis 116 COVID-19 425 SARS-CoV-2 453 Angiotensin-Converting Enzyme 2 177 Animals 1948 Ferrets 79 Host Specificity 132 Humans 1440 Mice 253 Peptidyl-Dipeptidase A 57 Rats 73 SARS-CoV-2 variants 86

Evidence records

2 total
Experimental Infection
1 records · 1 evidence types
Evidence type
1 records
OVE5842
Key finding

SARS-CoV-2 alpha, beta, gamma and delta variants were shown by pseudotyping experiments to overcome restriction for mouse ACE2 and show differing compatibility with rat, ferret and civet ACE2 receptors.

Virus
Host
Location
Not specified
Supporting text

Using viral pseudotyping, we examined whether the variants of concern (VOCs) alpha, beta, gamma and delta have differing host angiotensin-converting enzyme 2 (ACE2) receptor usage patterns, focusing on a range of relevant mammalian ACE2 proteins. All four VOCs were able to overcome a previous restriction for mouse ACE2, with demonstrable differences also seen for individual VOCs with rat, ferret or civet ACE2 receptors, changes that we subsequently attributed to N501Y and E484K substitutions within the spike RBD.

Method
viral pseudotyping | receptor-binding assay | ACE2 compatibility testing
Experimental system
ACE2 receptor usage pseudotype assay using mammalian ACE2 expression systems
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE5843
Key finding

N501Y and E484K substitutions in the spike receptor-binding domain of SARS-CoV-2 variants modify ACE2 receptor usage, enabling infection across multiple mammalian ACE2 orthologs.

Virus
Host
Not specified
Location
Not specified
Supporting text

Using viral pseudotyping, we examined whether the variants of concern (VOCs) alpha, beta, gamma and delta have differing host angiotensin-converting enzyme 2 (ACE2) receptor usage patterns, focusing on a range of relevant mammalian ACE2 proteins. All four VOCs were able to overcome a previous restriction for mouse ACE2, with demonstrable differences also seen for individual VOCs with rat, ferret or civet ACE2 receptors, changes that we subsequently attributed to N501Y and E484K substitutions within the spike RBD.

Genes or proteins
spike | receptor-binding domain (RBD)
Receptors
ACE2
Mutations
N501Y | E484K
Mechanism types
receptor usage | host-range expansion | receptor binding