Detection of SARS-CoV-2 in a free ranging leopard (Panthera pardus fusca) in India.

Sonalika Mahajan1 Mathesh Karikalan1 Vishal Chander1 Abhijit M Pawde1 G Saikumar1 M Semmaran2 P Sree Lakshmi1 Megha Sharma1 Sukdeb Nandi1 Karam Pal Singh1 Vivek Kumar Gupta3 Raj Kumar Singh1 Gaurav Kumar Sharma1
Affiliations 3 institutions
  1. ICAR-Indian Veterinary Research Institute Izatnagar, Bareilly, Uttar Pradesh 243122 India.
  2. Divisional Director, Social Forestry, Bijnor, Uttar Pradesh 246701 India.
  3. ICAR-National Research Centre On Pig, Rani, Guwahati, Assam 781131 India.

Abstract

We report an incidence of natural infection of SARS-CoV-2 in free-ranging Indian leopard (Panthera pardus fusca). The case was detected during routine screening. Post-mortem and laboratory examination suggested virus-induced interstitial pneumonia. Viral genome could be detected in various organs including brain, lung, spleen, and lymph nodes by real-time PCR. Whole-genome sequence analysis confirmed infection of Pango lineage B.1.617.2 of SARS-CoV-2. Till now, only Asiatic lions have been reported to be infected by SARS-CoV-2 in India. Infections in animals were detected during peak phase of pandemic and all the cases were captive with close contacts with humans, whereas the present case was observed when human cases were significantly low. No tangible evidence linked to widespread infection in the wild population and the incidence seems to be isolated case. High nucleotide sequence homology with prevailing viruses in humans suggested spillover infection to the animal. This report underlines the need for intensive screening of wild animals for keeping track of the virus evolution and development of carrier status of SARS-CoV-2 among wildlife species. The online version contains supplementary material available at 10.1007/s10344-022-01608-4.

Supporting text Virus Host Location
COVID-19 467 Delta variant 8 Leopard 1 SARS-CoV-2 550 Wild animals 2

Evidence records

3 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE6248
Key finding

SARS-CoV-2 genome was detected by real-time PCR in multiple organs of a free-ranging Indian leopard (Panthera pardus fusca) in India.

Virus
Host
Location
Supporting text

We report an incidence of natural infection of SARS-CoV-2 in free-ranging Indian leopard (Panthera pardus fusca). Viral genome could be detected in various organs including brain, lung, spleen, and lymph nodes by real-time PCR.

Method
real-time PCR
Sample type
brain | lung | spleen | lymph nodes
Geographic raw
India
Country inferred
IND
Transmission Evidence
1 records · 1 evidence types
Evidence type
1 records
OVE6249
Key finding

High nucleotide homology between leopard and human SARS-CoV-2 isolates indicates human-to-leopard spillover infection in India.

Virus
Host
Location
Supporting text

We report an incidence of natural infection of SARS-CoV-2 in free-ranging Indian leopard (Panthera pardus fusca) in India. High nucleotide sequence homology with prevailing viruses in humans suggested spillover infection to the animal.

Method
whole-genome sequence analysis | real-time PCR
Study design
post-mortem case investigation in a wild leopard
Transmission direction
human-to-animal
Geographic raw
India
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE6251
Key finding

Whole-genome sequence analysis showed that SARS-CoV-2 infecting the free-ranging Indian leopard belonged to Pango lineage B.1.617.2 (Delta variant).

Virus
Host
Location
Not specified
Supporting text

We report an incidence of natural infection of SARS-CoV-2 in free-ranging Indian leopard (Panthera pardus fusca). Whole-genome sequence analysis confirmed infection of Pango lineage B.1.617.2 of SARS-CoV-2.

Genes or proteins
whole genome
Analysis methods
whole-genome sequence analysis | phylogenetic lineage assignment