Literature detail

Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study.

HaiYing Chen1 Hui Yuan2 Rongbao Gao3 Jinxiang Zhang4 Dayan Wang3 Ying Xiong2 GuoYin Fan1 Fan Yang5 Xiaodan Li3 Jianfang Zhou3 Shumei Zou3 Lei Yang3 Tao Chen3 Libo Dong3 Hong Bo3 Xiang Zhao3 Ye Zhang3 Yu Lan3 Tian Bai3 Jie Dong3 Qun Li6 ShiWen Wang3 YanPing Zhang6 Hui Li1 Tian Gong2 Yong Shi2 Xiansheng Ni1 Jianxiong Li2 Jun Zhou2 Jiyi Fan7 Jingwen Wu1 Xianfeng Zhou1 Maohong Hu1 Jianguo Wan4 WeiZhong Yang6 DeXin Li3 Guizhen Wu3 ZiJian Feng6 George F Gao6 Yu Wang6 Qi Jin5 Mingbin Liu1 Yuelong Shu8,9
Affiliations 9 institutions
  1. Nanchang City Disease Control and Prevention, Nanchang, China.
  2. Jiangxi Provincial Disease Control and Prevention, Nanchang, China.
  3. National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, China.
  4. The First Hospital of Nanchang, Nanchang, China.
  5. MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
  6. Chinese Center for Disease Control and Prevention, Beijing, China.
  7. Donghu District Center for Disease Control and Prevention, Nanchang, China.
  8. National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, China
  9. Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China. Electronic address: [email protected].
PMID 24507376 2014 Lancet eng ppublish
PubMed DOI Browse context

Article

Publication summary

Human infections with different avian influenza viruses--eg, H5N1, H9N2, and H7N9--have raised concerns about pandemic potential worldwide. We report the first human infection with a novel reassortant avian influenza A H10N8 virus. We obtained and analysed clinical, epidemiological, and virological data from a patient from Nanchang City, China. Tracheal aspirate specimens were tested for influenza virus and other possible pathogens by RT-PCR, viral culture, and sequence analyses. A maximum likelihood phylogenetic tree was constructed. A woman aged 73 years presented with fever and was admitted to hospital on Nov 30, 2013. She developed multiple organ failure and died 9 days after illness onset. A novel reassortant avian influenza A H10N8 virus was isolated from the tracheal aspirate specimen obtained from the patient 7 days after onset of illness. Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference. A mixture of glutamic acid and lysine at residue 627 in PB2 protein--which is associated with mammalian adaptation--was detected in the original tracheal aspirate samples. The virus was sensitive to neuraminidase inhibitors. Sputum and blood cultures and deep sequencing analysis indicated no co-infection with bacteria or fungi. Epidemiological investigation established that the patient had visited a live poultry market 4 days before illness onset. The novel reassortant H10N8 virus obtained is distinct from previously reported H10N8 viruses. The virus caused human infection and could have been associated with the death of a patient. Emergency Research Project on human infection with avian influenza H7N9 virus, the National Basic Research Program of China, and the National Mega-projects for Infectious Diseases.

Aged Animals Antiviral Agents China Commerce DNA, Viral Fatal Outcome Female Glutamic Acid Humans Influenza A virus Influenza A Virus, H9N2 Subtype Influenza in Birds Influenza, Human Lysine Multiple Organ Failure Neuraminidase Phylogeny

Structured evidence records

Evidence records

6 total
1 records
Extraction confidence 0.80
Key finding

Phylogenetic and sequence analyses showed that the novel H10N8 virus infecting a human in China was a reassortant with avian-origin genes, including six from H9N2, and contained molecular features linked to mammalian adaptation.

Virus
Location
Not specified
Supporting text

Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. A maximum likelihood phylogenetic tree was constructed, and amino acid markers in HA and PB2 proteins associated with receptor binding and mammalian adaptation were characterized.

Genes or proteins
HA; PB2; internal genes
Analysis methods
sequence analysis; phylogenetic analysis
1 records
Extraction confidence 0.95
Key finding

The H10N8 virus isolated from the human case carried avian-origin genes including HA with an avian-like receptor-binding motif and a PB2 627E/K polymorphism linked to mammalian adaptation.

Virus
Host
Not specified
Location
Not specified
Supporting text

Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference. A mixture of glutamic acid and lysine at residue 627 in PB2 protein--which is associated with mammalian adaptation--was detected in the original tracheal aspirate samples.

Genes or proteins
haemagglutinin; PB2
Mutations
HA residues 226-228 GlnSerGly motif; PB2 E627K polymorphism
Mechanism types
receptor_binding; polymerase_activity; mammalian_adaptation
1 records
Extraction confidence 0.90
Key finding

A human was infected with avian influenza A H10N8 virus following exposure at a live poultry market.

Virus
Location
Supporting text

Epidemiological investigation established that the patient had visited a live poultry market 4 days before illness onset.

Method
RT-PCR; viral culture; sequence analyses; phylogenetic analysis
Transmission direction
animal-to-human
Geographic raw
Nanchang City, China
Country inferred
China
Outbreak setting
live poultry market
Outbreak time
Nov 30, 2013
Outbreak scale
single case
1 records
Extraction confidence 0.82
Key finding

The H10N8 virus haemagglutinin possessed the GlnSerGly motif (residues 226–228) conferring avian-type receptor-binding specificity.

Virus
Location
Not specified
Supporting text

Sequence analyses revealed that all the genes of the virus were of avian origin ... The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference.

Method
sequence analysis
Receptors
haemagglutinin receptor-binding site (avian-like receptor binding preference)
1 records
Extraction confidence 0.96
Key finding

A novel reassortant avian influenza A H10N8 virus infecting a human contained six internal genes from avian influenza A H9N2 viruses, demonstrating reassortment linked to emergence in humans.

Host
Not specified
Location
Not specified
Supporting text

We report the first human infection with a novel reassortant avian influenza A H10N8 virus. Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses.

Event type
reassortment
Genes or segments
six internal genes
1 records
Extraction confidence 0.98
Key finding

A fatal human case of avian influenza A H10N8 infection was confirmed in China following recent exposure to live poultry, providing direct evidence of animal-to-human spillover.

Virus
Location
Supporting text

We report the first human infection with a novel reassortant avian influenza A H10N8 virus… Epidemiological investigation established that the patient had visited a live poultry market 4 days before illness onset.

Method
RT-PCR; viral culture; sequence analyses; phylogenetic analysis
Study design
case report
Transmission direction
animal-to-human
Geographic raw
Nanchang City, China
Country inferred
China