Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study.
HaiYing Chen1
Hui Yuan2
Rongbao Gao3
Jinxiang Zhang4
Dayan Wang3
Ying Xiong2
GuoYin Fan1
Fan Yang5
Xiaodan Li3
Jianfang Zhou3
Shumei Zou3
Lei Yang3
Tao Chen3
Libo Dong3
Hong Bo3
Xiang Zhao3
Ye Zhang3
Yu Lan3
Tian Bai3
Jie Dong3
Qun Li6
ShiWen Wang3
YanPing Zhang6
Hui Li1
Tian Gong2
Yong Shi2
Xiansheng Ni1
Jianxiong Li2
Jun Zhou2
Jiyi Fan7
Jingwen Wu1
Xianfeng Zhou1
Maohong Hu1
Jianguo Wan4
WeiZhong Yang6
DeXin Li3
Guizhen Wu3
ZiJian Feng6
George F Gao6
Yu Wang6
Qi Jin5
Mingbin Liu1
Yuelong Shu8,9
Affiliations9 institutions
Nanchang City Disease Control and Prevention, Nanchang, China.
Jiangxi Provincial Disease Control and Prevention, Nanchang, China.
National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, China.
The First Hospital of Nanchang, Nanchang, China.
MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Chinese Center for Disease Control and Prevention, Beijing, China.
Donghu District Center for Disease Control and Prevention, Nanchang, China.
National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, China
Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China. Electronic address: [email protected].
Human infections with different avian influenza viruses--eg, H5N1, H9N2, and H7N9--have raised concerns about pandemic potential worldwide. We report the first human infection with a novel reassortant avian influenza A H10N8 virus. We obtained and analysed clinical, epidemiological, and virological data from a patient from Nanchang City, China. Tracheal aspirate specimens were tested for influenza virus and other possible pathogens by RT-PCR, viral culture, and sequence analyses. A maximum likelihood phylogenetic tree was constructed. A woman aged 73 years presented with fever and was admitted to hospital on Nov 30, 2013. She developed multiple organ failure and died 9 days after illness onset. A novel reassortant avian influenza A H10N8 virus was isolated from the tracheal aspirate specimen obtained from the patient 7 days after onset of illness. Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference. A mixture of glutamic acid and lysine at residue 627 in PB2 protein--which is associated with mammalian adaptation--was detected in the original tracheal aspirate samples. The virus was sensitive to neuraminidase inhibitors. Sputum and blood cultures and deep sequencing analysis indicated no co-infection with bacteria or fungi. Epidemiological investigation established that the patient had visited a live poultry market 4 days before illness onset. The novel reassortant H10N8 virus obtained is distinct from previously reported H10N8 viruses. The virus caused human infection and could have been associated with the death of a patient. Emergency Research Project on human infection with avian influenza H7N9 virus, the National Basic Research Program of China, and the National Mega-projects for Infectious Diseases.
AgedAnimalsAntiviral AgentsChinaCommerceDNA, ViralFatal OutcomeFemaleGlutamic AcidHumansInfluenza A virusInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsInfluenza, HumanLysineMultiple Organ FailureNeuraminidasePhylogeny
Structured evidence records
Evidence records
6 total
Genomic Evolution1 records
Genomic EvolutionExtraction confidence 0.80
Key finding
Phylogenetic and sequence analyses showed that the novel H10N8 virus infecting a human in China was a reassortant with avian-origin genes, including six from H9N2, and contained molecular features linked to mammalian adaptation.
Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. A maximum likelihood phylogenetic tree was constructed, and amino acid markers in HA and PB2 proteins associated with receptor binding and mammalian adaptation were characterized.
Genes or proteins
HA; PB2; internal genes
Analysis methods
sequence analysis; phylogenetic analysis
Molecular Adaptation1 records
Molecular AdaptationExtraction confidence 0.95
Key finding
The H10N8 virus isolated from the human case carried avian-origin genes including HA with an avian-like receptor-binding motif and a PB2 627E/K polymorphism linked to mammalian adaptation.
Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference. A mixture of glutamic acid and lysine at residue 627 in PB2 protein--which is associated with mammalian adaptation--was detected in the original tracheal aspirate samples.
Genes or proteins
haemagglutinin; PB2
Mutations
HA residues 226-228 GlnSerGly motif; PB2 E627K polymorphism
Sequence analyses revealed that all the genes of the virus were of avian origin ... The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference.
Method
sequence analysis
Receptors
haemagglutinin receptor-binding site (avian-like receptor binding preference)
Recombination Or Reassortment1 records
Recombination Or ReassortmentExtraction confidence 0.96
Key finding
A novel reassortant avian influenza A H10N8 virus infecting a human contained six internal genes from avian influenza A H9N2 viruses, demonstrating reassortment linked to emergence in humans.
We report the first human infection with a novel reassortant avian influenza A H10N8 virus. Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses.
Event type
reassortment
Genes or segments
six internal genes
Spillover Event1 records
Spillover EventExtraction confidence 0.98
Key finding
A fatal human case of avian influenza A H10N8 infection was confirmed in China following recent exposure to live poultry, providing direct evidence of animal-to-human spillover.
We report the first human infection with a novel reassortant avian influenza A H10N8 virus… Epidemiological investigation established that the patient had visited a live poultry market 4 days before illness onset.