Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study.

HaiYing Chen1 Hui Yuan2 Rongbao Gao3 Jinxiang Zhang4 Dayan Wang3 Ying Xiong2 GuoYin Fan1 Fan Yang5 Xiaodan Li3 Jianfang Zhou3 Shumei Zou3 Lei Yang3 Tao Chen3 Libo Dong3 Hong Bo3 Xiang Zhao3 Ye Zhang3 Yu Lan3 Tian Bai3 Jie Dong3 Qun Li6 ShiWen Wang3 YanPing Zhang6 Hui Li1 Tian Gong2 Yong Shi2 Xiansheng Ni1 Jianxiong Li2 Jun Zhou2 Jiyi Fan7 Jingwen Wu1 Xianfeng Zhou1 Maohong Hu1 Jianguo Wan4 WeiZhong Yang6 DeXin Li3 Guizhen Wu3 ZiJian Feng6 George F Gao6 Yu Wang6 Qi Jin5 Mingbin Liu1 Yuelong Shu8,9
Affiliations 9 institutions
  1. Nanchang City Disease Control and Prevention, Nanchang, China.
  2. Jiangxi Provincial Disease Control and Prevention, Nanchang, China.
  3. National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, China.
  4. The First Hospital of Nanchang, Nanchang, China.
  5. MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
  6. Chinese Center for Disease Control and Prevention, Beijing, China.
  7. Donghu District Center for Disease Control and Prevention, Nanchang, China.
  8. National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, China
  9. Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China. Electronic address: [email protected].

Abstract

Human infections with different avian influenza viruses--eg, H5N1, H9N2, and H7N9--have raised concerns about pandemic potential worldwide. We report the first human infection with a novel reassortant avian influenza A H10N8 virus. We obtained and analysed clinical, epidemiological, and virological data from a patient from Nanchang City, China. Tracheal aspirate specimens were tested for influenza virus and other possible pathogens by RT-PCR, viral culture, and sequence analyses. A maximum likelihood phylogenetic tree was constructed. A woman aged 73 years presented with fever and was admitted to hospital on Nov 30, 2013. She developed multiple organ failure and died 9 days after illness onset. A novel reassortant avian influenza A H10N8 virus was isolated from the tracheal aspirate specimen obtained from the patient 7 days after onset of illness. Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses. The aminoacid motif GlnSerGly at residues 226-228 of the haemagglutinin protein indicated avian-like receptor binding preference. A mixture of glutamic acid and lysine at residue 627 in PB2 protein--which is associated with mammalian adaptation--was detected in the original tracheal aspirate samples. The virus was sensitive to neuraminidase inhibitors. Sputum and blood cultures and deep sequencing analysis indicated no co-infection with bacteria or fungi. Epidemiological investigation established that the patient had visited a live poultry market 4 days before illness onset. The novel reassortant H10N8 virus obtained is distinct from previously reported H10N8 viruses. The virus caused human infection and could have been associated with the death of a patient. Emergency Research Project on human infection with avian influenza H7N9 virus, the National Basic Research Program of China, and the National Mega-projects for Infectious Diseases.

Supporting text Virus Host Location
Aged 31 Animals 1948 Antiviral Agents 21 China 229 Commerce 3 DNA, Viral 39 Fatal Outcome 8 Female 289 Glutamic Acid 2 Humans 1440 Influenza A virus 186 Influenza A Virus, H9N2 Subtype 71 Influenza in Birds 341 Influenza, Human 286 Lysine 1 Multiple Organ Failure 2 Neuraminidase 62 Phylogeny 805 Poultry 112 Reverse Transcriptase Polymerase Chain Reaction 35 RNA-Dependent RNA Polymerase 49 Sequence Analysis, DNA 113 Trachea 16 Viral Proteins 152

Evidence records

5 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE1668
Key finding

A novel reassortant avian influenza A H10N8 virus was successfully isolated from a human tracheal aspirate specimen obtained from the patient 7 days after illness onset.

Virus
Host
Location
Not specified
Supporting text

A novel reassortant avian influenza A H10N8 virus was isolated from the tracheal aspirate specimen obtained from the patient 7 days after onset of illness.

Sample type
tracheal aspirate specimen
Transmission Evidence
1 records · 1 evidence types
Evidence type
1 records
OVE1673
Key finding

A fatal human case of avian influenza A H10N8 virus infection was clinically and epidemiologically investigated in Nanchang City, China in 2013.

Virus
Host
Location
Supporting text

We report the first human infection with a novel reassortant avian influenza A H10N8 virus. We obtained and analysed clinical, epidemiological, and virological data from a patient from Nanchang City, China.

Method
clinical investigation | epidemiological investigation | virological data analysis | RT-PCR | viral culture | sequence analyses
Transmission direction
animal-to-human
Geographic raw
Nanchang City, China
Country inferred
CHN
Outbreak setting
live poultry market and hospital setting
Outbreak time
Nov 30, 2013
Outbreak scale
single fatal case
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE1669
Key finding

The PB2 protein of the avian influenza A H10N8 virus isolated from a human case contained a mixture of residues 627E and 627K, indicating possible mammalian adaptation.

Virus
Host
Not specified
Location
Not specified
Supporting text

A mixture of glutamic acid and lysine at residue 627 in PB2 protein--which is associated with mammalian adaptation--was detected in the original tracheal aspirate samples.

Genes or proteins
PB2 protein
Mutations
627E | 627K
Mechanism types
host-range expansion | replication adaptation
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE1671
Key finding

A novel avian influenza A H10N8 virus that infected a human was a reassortant containing six internal genes derived from avian influenza A H9N2 viruses.

Virus
Host
Not specified
Location
Not specified
Supporting text

Sequence analyses revealed that all the genes of the virus were of avian origin, with six internal genes from avian influenza A H9N2 viruses.

Event type
reassortment
Genes or segments
six internal genes
OVE1672
Key finding

A novel reassortant avian influenza A H10N8 virus infected a human, indicating zoonotic spillover from an avian source in Nanchang City, China.

Virus
Host
Location
Supporting text

We report the first human infection with a novel reassortant avian influenza A H10N8 virus. We obtained and analysed clinical, epidemiological, and virological data from a patient from Nanchang City, China.

Event type
reassortment