Literature detail

Detection of influenza A virus from agricultural fair environment: Air and surfaces.

Sarah E Lauterbach1 Courtney M Wright2 Michele M Zentkovich3 Sarah W Nelson4 Joshua N Lorbach5 Nola T Bliss6 Jacqueline M Nolting7 Raymond M Pierson8 Maria D King9 Andrew S Bowman10
Affiliations 10 institutions
  1. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  2. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  3. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  4. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  5. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  6. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  7. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  8. Northrop Grumman ES Homeland Defense Group, 7055 Troy Hill Drive S#300, Elkridge, MD, 21075, USA. Electronic address: [email protected].
  9. Texas A&M University, Department of Biological and Agricultural Engineering, 333 Spence Street, MS 2117, College Station, TX, 77843, USA. Electronic address: [email protected].
  10. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
PMID 29653731 2018 Prev Vet Med eng ppublish
PubMed DOI Browse context

Article

Publication summary

Agricultural fairs facilitate an environment conducive to the spread of influenza A virus with large numbers of pigs from various different locales comingling for several days (5-8 days). Fairs are also associated with zoonotic transmission of influenza A virus as humans have unrestricted contact with potentially infected swine throughout the fair's duration. Since 2005, the Centers for Disease Control and Prevention has reported 468 cases of variant influenza A virus, with most cases having had exposure to swine at agricultural fairs. Many mechanisms have been proposed as potential direct and indirect routes of transmission that may be enhancing intra- and inter-species transmission of influenza A virus at fairs. This study examines airborne respiratory droplets and portable animal-care items as potential routes of transmission that may be contributing to enhanced viral spread throughout the swine barn and the resulting variant cases of influenza A. Air samples were taken from inside swine barns at 25 fairs between the years 2013 and 2014. Influenza A virus was detected molecularly in 11 of 59 (18.6%) air samples, representing 4 of the 25 fairs. Viable H1N1 virus, matching virus recovered from swine at the fair, was recovered from the air at one fair in 2013. During the summer of 2016, 75 of 400 (18.8%) surface samples tested positive for molecular presence of influenza A virus and represented 10 of 20 fairs. Seven viral isolates collected from four fairs were recovered from the surfaces. Whole genome sequences of the viruses recovered from the surfaces are >99% identical to the viruses recovered from individual pigs at each respective fair. The detection and recovery of influenza A virus from both the air and surfaces found within the swine barn at agricultural fairs provide evidence for potential viral transmission through these routes, which may contribute to both intra- and inter-species transmission, threatening public health. These findings reinforce the need for new and improved mitigation strategies at agricultural fairs in order to reduce the risk to animal and public health.

Air microbiology Fomites Public health Swine Transmission Zoonoses Animals Communicable Disease Control Disease Outbreaks Humans Influenza A virus Influenza A Virus, H1N1 Subtype Influenza, Human Orthomyxoviridae Infections Swine Swine Diseases

Structured evidence records

Evidence records

5 total
2 records
Extraction confidence 0.95
Key finding

Influenza A virus, including viable H1N1, was detected in air samples from swine barns at agricultural fairs, indicating environmental presence of swine-associated virus.

Virus
Host
Location
Supporting text

Air samples were taken from inside swine barns at 25 fairs between the years 2013 and 2014. Influenza A virus was detected molecularly in 11 of 59 (18.6%) air samples, representing 4 of the 25 fairs. Viable H1N1 virus, matching virus recovered from swine at the fair, was recovered from the air at one fair in 2013.

Method
molecular detection; virus isolation
Sample type
air
Geographic raw
agricultural fairs
Country inferred
United States
Extraction confidence 0.95
Key finding

Surface samples from swine barns at agricultural fairs contained influenza A virus highly similar to strains from pigs, confirming environmental contamination linked to swine viral circulation.

Virus
Host
Location
Supporting text

During the summer of 2016, 75 of 400 (18.8%) surface samples tested positive for molecular presence of influenza A virus and represented 10 of 20 fairs. Seven viral isolates collected from four fairs were recovered from the surfaces. Whole genome sequences of the viruses recovered from the surfaces are >99% identical to the viruses recovered from individual pigs at each respective fair.

Method
molecular detection; whole genome sequencing
Sample type
surface
Geographic raw
agricultural fairs
Country inferred
United States
1 records
Extraction confidence 0.85
Key finding

Influenza A virus undergoes intra- and inter-species transmission among non-human animal hosts (pigs from diverse sources) at agricultural fairs.

Virus
Location
Supporting text

Agricultural fairs facilitate an environment conducive to the spread of influenza A virus with large numbers of pigs from various different locales comingling for several days (5–8 days)... Many mechanisms have been proposed as potential direct and indirect routes of transmission that may be enhancing intra- and inter-species transmission of influenza A virus at fairs.

Method
air sampling; surface sampling; molecular detection; virus isolation; whole genome sequencing
Study design
field surveillance
Transmission direction
animal-to-animal
Geographic raw
agricultural fairs
Country inferred
United States
1 records
Extraction confidence 0.90
Key finding

Influenza A (H1N1) viruses recovered from agricultural fair surfaces showed >99% whole genome identity with viruses from pigs at the same fairs, indicating close genetic relatedness between environmental and swine isolates.

Virus
Host
Location
Not specified
Supporting text

Whole genome sequences of the viruses recovered from the surfaces are >99% identical to the viruses recovered from individual pigs at each respective fair.

Genes or proteins
whole genome
Analysis methods
whole genome sequencing; comparative genomic analysis
1 records
Extraction confidence 0.80
Key finding

Influenza A (H1N1) virus originating from pigs was detected in air and on surfaces at agricultural fairs, providing evidence for potential swine-to-human spillover leading to human variant influenza A infections.

Virus
Location
Supporting text

Viable H1N1 virus, matching virus recovered from swine at the fair, was recovered from the air at one fair in 2013. Whole genome sequences of the viruses recovered from the surfaces are >99% identical to the viruses recovered from individual pigs at each respective fair. These environmental viruses may contribute to variant cases of influenza A among humans exposed to pigs at agricultural fairs.

Method
molecular detection; virus isolation; whole genome sequencing
Study design
field surveillance
Transmission direction
animal-to-human
Geographic raw
agricultural fairs