Detection of influenza A virus from agricultural fair environment: Air and surfaces.

Sarah E Lauterbach1 Courtney M Wright2 Michele M Zentkovich3 Sarah W Nelson4 Joshua N Lorbach5 Nola T Bliss6 Jacqueline M Nolting7 Raymond M Pierson8 Maria D King9 Andrew S Bowman10
Affiliations 10 institutions
  1. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  2. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  3. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  4. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  5. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  6. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  7. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].
  8. Northrop Grumman ES Homeland Defense Group, 7055 Troy Hill Drive S#300, Elkridge, MD, 21075, USA. Electronic address: [email protected].
  9. Texas A&M University, Department of Biological and Agricultural Engineering, 333 Spence Street, MS 2117, College Station, TX, 77843, USA. Electronic address: [email protected].
  10. The Ohio State University, Department of Veterinary Preventive Medicine, 1920 Coffey Road, Columbus, OH, 43201, USA. Electronic address: [email protected].

Abstract

Agricultural fairs facilitate an environment conducive to the spread of influenza A virus with large numbers of pigs from various different locales comingling for several days (5-8 days). Fairs are also associated with zoonotic transmission of influenza A virus as humans have unrestricted contact with potentially infected swine throughout the fair's duration. Since 2005, the Centers for Disease Control and Prevention has reported 468 cases of variant influenza A virus, with most cases having had exposure to swine at agricultural fairs. Many mechanisms have been proposed as potential direct and indirect routes of transmission that may be enhancing intra- and inter-species transmission of influenza A virus at fairs. This study examines airborne respiratory droplets and portable animal-care items as potential routes of transmission that may be contributing to enhanced viral spread throughout the swine barn and the resulting variant cases of influenza A. Air samples were taken from inside swine barns at 25 fairs between the years 2013 and 2014. Influenza A virus was detected molecularly in 11 of 59 (18.6%) air samples, representing 4 of the 25 fairs. Viable H1N1 virus, matching virus recovered from swine at the fair, was recovered from the air at one fair in 2013. During the summer of 2016, 75 of 400 (18.8%) surface samples tested positive for molecular presence of influenza A virus and represented 10 of 20 fairs. Seven viral isolates collected from four fairs were recovered from the surfaces. Whole genome sequences of the viruses recovered from the surfaces are >99% identical to the viruses recovered from individual pigs at each respective fair. The detection and recovery of influenza A virus from both the air and surfaces found within the swine barn at agricultural fairs provide evidence for potential viral transmission through these routes, which may contribute to both intra- and inter-species transmission, threatening public health. These findings reinforce the need for new and improved mitigation strategies at agricultural fairs in order to reduce the risk to animal and public health.

Supporting text Virus Host Location
Air microbiology 6 Fomites 4 Public health 37 Swine 267 Transmission 55 Zoonoses 477 Animals 1949 Communicable Disease Control 7 Disease Outbreaks 170 Humans 1441 Influenza A virus 186 Influenza A Virus, H1N1 Subtype 74 Influenza, Human 286 Orthomyxoviridae Infections 228 Swine 258 Swine Diseases 153

Evidence records

5 total
Zoonotic Surveillance
4 records · 2 evidence types
Evidence type
2 records
OVE2953
Key finding

Viable H1N1 influenza A virus matching the swine strain was successfully recovered from air samples collected inside a swine barn at one agricultural fair in 2013.

Virus
Host
Not specified
Location
Not specified
Supporting text

Viable H1N1 virus, matching virus recovered from swine at the fair, was recovered from the air at one fair in 2013.

Sample type
air sample
OVE2954
Key finding

Seven infectious influenza A virus isolates were recovered from surface samples collected at four agricultural fairs.

Virus
Host
Not specified
Location
Not specified
Supporting text

Seven viral isolates collected from four fairs were recovered from the surfaces.

Sample type
surface sample
Evidence type
2 records
OVE2951
Key finding

Influenza A virus RNA was molecularly detected in 11 of 59 air samples collected inside swine barns at 4 of 25 agricultural fairs.

Virus
Host
Location
Supporting text

Air samples were taken from inside swine barns at 25 fairs between the years 2013 and 2014. Influenza A virus was detected molecularly in 11 of 59 (18.6%) air samples, representing 4 of the 25 fairs.

Method
molecular detection | PCR-based methods
Sample type
air samples
Geographic raw
agricultural fairs
OVE2952
Key finding

Influenza A virus RNA was molecularly detected in 75 of 400 surface samples collected from swine barn environments at 10 of 20 agricultural fairs.

Virus
Host
Location
Supporting text

During the summer of 2016, 75 of 400 (18.8%) surface samples tested positive for molecular presence of influenza A virus and represented 10 of 20 fairs.

Method
molecular detection | PCR-based methods
Sample type
surface samples
Geographic raw
agricultural fairs
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE2955
Key finding

Whole genome phylogenetic comparison showed that influenza A viruses recovered from fairground surfaces were over 99% identical to the viruses recovered from pigs at the same fairs, indicating close genetic relatedness.

Virus
Host
Location
Not specified
Supporting text

Whole genome sequences of the viruses recovered from the surfaces are >99% identical to the viruses recovered from individual pigs at each respective fair.

Genes or proteins
whole genome
Analysis methods
whole genome comparison | sequence identity analysis