Detection of SARS-CoV-2 in respiratory samples from cats in the UK associated with human-to-cat transmission.

Margaret J Hosie1 Ilaria Epifano1 Vanessa Herder1 Richard J Orton1 Andrew Stevenson1 Natasha Johnson1 Emma MacDonald2 Dawn Dunbar2 Michael McDonald2 Fiona Howie3 Bryn Tennant3 Darcy Herrity4 Ana Da Silva Filipe1 Daniel G Streicker1,5 COVID-19 Genomics UK (COG-UK) consortium Brian J Willett1 Pablo R Murcia1 Ruth F Jarrett1 David L Robertson1 William Weir2
Affiliations 5 institutions
  1. MRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
  2. Veterinary Diagnostics Service, School of Veterinary Medicine, University of Glasgow, Glasgow, UK.
  3. SRUC Veterinary Services, Pentlands Science Park, Penicuik, Midlothian, UK.
  4. Fareham Creek Veterinary Surgery, Fareham, Hampshire, UK.
  5. Animal Health and Comparative Medicine, Institute of Biodiversity University of Glasgow, Glasgow, UK.

Abstract

The aim of the study was to find evidence of SARS-CoV-2 infection in UK cats. Tissue samples were tested for SARS-CoV-2 antigen using immunofluorescence and for viral RNA by in situ hybridisation. A set of 387 oropharyngeal swabs that had been submitted for routine respiratory pathogen testing was tested for SARS-CoV-2 RNA using reverse transcriptase quantitative PCR. Lung tissue collected post-mortem from cat 1 tested positive for both SARS-CoV-2 nucleocapsid antigen and RNA. SARS-CoV-2 RNA was detected in an oropharyngeal swab collected from cat 2 that presented with rhinitis and conjunctivitis. High throughput sequencing of the viral genome revealed five single nucleotide polymorphisms (SNPs) compared to the nearest UK human SARS-CoV-2 sequence, and this human virus contained eight SNPs compared to the original Wuhan-Hu-1 reference sequence. An analysis of the viral genome of cat 2 together with nine other feline-derived SARS-CoV-2 sequences from around the world revealed no shared cat-specific mutations. These findings indicate that human-to-cat transmission of SARS-CoV-2 occurred during the COVID-19 pandemic in the UK, with the infected cats developing mild or severe respiratory disease. Given the ability of the new coronavirus to infect different species, it will be important to monitor for human-to-cat, cat-to-cat and cat-to-human transmission.

Supporting text Virus Host Location
cats 133 COVID-19 467 reverse zoonosis 38 SARS-CoV-2 550 Zoonoses 397 Animals 1948 Cat Diseases 67 Cats 120 COVID-19 425 Female 289 Humans 1440 Lung 65 RNA, Viral 193 SARS-CoV-2 453 United Kingdom 8

Evidence records

4 total
Zoonotic Surveillance
2 records · 1 evidence types
Evidence type
2 records
OVE4738
Key finding

SARS-CoV-2 nucleocapsid antigen and RNA were detected in lung tissue from one cat in the UK.

Virus
Host
Location
Supporting text

Lung tissue collected post-mortem from cat 1 tested positive for both SARS-CoV-2 nucleocapsid antigen and RNA.

Method
immunofluorescence | in situ hybridisation
Sample type
lung tissue
Geographic raw
UK
Country inferred
GBR
OVE4739
Key finding

SARS-CoV-2 RNA was detected in an oropharyngeal swab from a cat with respiratory symptoms in the UK.

Virus
Host
Location
Supporting text

SARS-CoV-2 RNA was detected in an oropharyngeal swab collected from cat 2 that presented with rhinitis and conjunctivitis.

Method
reverse transcriptase quantitative PCR (RT-qPCR)
Sample type
oropharyngeal swab
Geographic raw
UK
Country inferred
GBR
Transmission Evidence
1 records · 1 evidence types
Evidence type
1 records
OVE4740
Key finding

Human-to-cat transmission of SARS-CoV-2 occurred during the COVID-19 pandemic in the UK.

Virus
Host
Location
Supporting text

These findings indicate that human-to-cat transmission of SARS-CoV-2 occurred during the COVID-19 pandemic in the UK.

Method
reverse transcriptase quantitative PCR | immunofluorescence | in situ hybridisation | high throughput genome sequencing
Study design
observational detection study in domestic cats with genomic comparison to local human SARS-CoV-2 sequences
Transmission direction
human-to-animal
Geographic raw
UK
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE4741
Key finding

Whole‑genome sequencing showed that the SARS‑CoV‑2 strain from cat 2 differed by five SNPs from the most similar UK human sequence and by eight SNPs from the Wuhan‑Hu‑1 reference, indicating close phylogenetic relatedness to contemporary human viruses.

Virus
Host
Location
Not specified
Supporting text

High throughput sequencing of the viral genome revealed five single nucleotide polymorphisms (SNPs) compared to the nearest UK human SARS-CoV-2 sequence, and this human virus contained eight SNPs compared to the original Wuhan-Hu-1 reference sequence.

Genes or proteins
whole genome
Analysis methods
high throughput sequencing | SNP comparison