Whole-genome characterization and pathogenicity of novel human-porcine reassortant rotavirus strains G9P[7] and G1P[7] in China.

Meizhen Li1,2 Mengli Qiao1,2 Keshun Bao1,2 Yuanhang Zhang1,2 Panchi Zhang1,2 Jing Chen1,2 Qi Luan1,2 Kun Li1,2 Li Wang3,4 Bin Zhou5,6,7,8
Affiliations 8 institutions
  1. MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, China.
  2. Key Laboratory of Animal Bacteriology, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, Nanjing, China.
  3. College of Veterinary Medicine, Northeast Agricultural University, Harbin, China. [email protected].
  4. Northeast Science Observation Station for Animal Pathogen Biology, Ministry of Agriculture and Rural Affairs, Harbin, China. [email protected].
  5. MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, China. [email protected].
  6. Key Laboratory of Animal Bacteriology, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, Nanjing, China. [email protected].
  7. College of Veterinary Medicine, Northeast Agricultural University, Harbin, China. [email protected].
  8. Northeast Science Observation Station for Animal Pathogen Biology, Ministry of Agriculture and Rural Affairs, Harbin, China. [email protected].

Abstract

The prevalence of porcine rotavirus A (PoRVA) in China has increased significantly, threatening the swine industry. Pigs serve as "mixing vessels" for rotaviruses, facilitating reassortment between human and animal strains, leading to the emergence of zoonotic variants. In this study, two PoRVA strains, XXW2023 (G9P[7]) and HD2023 (G1P[7]), were isolated from diarrheic piglets in Guangdong Province, China. Genomic analysis revealed that both strains were human-porcine reassortants, with VP1, VP3, and NSP1 genes closely related to human rotaviruses. Intragenic recombination was identified in the VP4 and VP6 genes. Pathogenicity was evaluated in 7-day-old mice and 1-day-old piglets. Both strains caused persistent diarrhea in mice and severe watery diarrhea, intestinal lesions, and death within 48 h in piglets. Systemic infection was confirmed, with viral replication detected in the lungs. Infectious virus titers, VP6 antigen, and NSP4 were detected in lung tissues, providing evidence of active replication in the respiratory tract. The strains exhibited distinct tissue tropism, with XXW2023 being enterotropic and HD2023 showing pulmonary tropism. Viral RNA and antigen levels in the lungs of HD2023-infected piglets exceeded those in their intestines, and the infectious virus titer in their lungs was significantly higher than that in the lungs of XXW2023-infected piglets. These findings demonstrate that reassortant rotavirus strains infect the respiratory tract, extending the conventional view of rotavirus as a strictly enteric pathogen. The emergence of these highly pathogenic, phenotypically divergent human-porcine reassortants underscores their zoonotic risk, highlighting the need for enhanced surveillance and reconsideration of vaccine coverage.

Supporting text Virus Host Location
pathogenicity 54 PoRVA 1 pulmonary tropism 2 reassortment 36 recombination 40 zoonotic risk 9 Genome, Viral 317 Reassortant Viruses 103 Rotavirus 65 Rotavirus Infections 61 Swine Diseases 153 Animals 1948 China 229 Diarrhea 29 Humans 1440 Mice 253 Phylogeny 805 Swine 258 Virulence 108

Evidence records

8 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE11668
Key finding

Two porcine rotavirus A strains, XXW2023 (G9P[7]) and HD2023 (G1P[7]), were isolated from diarrheic piglets in Guangdong Province, China.

Virus
Host
Location
Not specified
Supporting text

two PoRVA strains, XXW2023 (G9P[7]) and HD2023 (G1P[7]), were isolated from diarrheic piglets in Guangdong Province, China.

Evidence type
1 records
OVE11675
Key finding

Rotavirus strains XXW2023 (G9P[7]) and HD2023 (G1P[7]) were detected with viral RNA/antigen and infectious titers in the lungs of infected piglets, indicating respiratory replication.

Virus
Host
Location
Supporting text

In this study, two PoRVA strains, XXW2023 (G9P[7]) and HD2023 (G1P[7]), were isolated from diarrheic piglets in Guangdong Province, China. Systemic infection was confirmed, with viral replication detected in the lungs. Infectious virus titers, VP6 antigen, and NSP4 were detected in lung tissues, providing evidence of active replication in the respiratory tract.

Method
infectious virus titers | antigen detection (VP6, NSP4)
Sample type
lung tissues
Geographic raw
Guangdong Province, China
Country inferred
CHN
Experimental Infection
4 records · 1 evidence types
Evidence type
4 records
OVE11672
Key finding

In 1-day-old piglets, both strains XXW2023 (G9P[7]) and HD2023 (G1P[7]) caused severe watery diarrhea, intestinal lesions, and death within 48 hours.

Virus
Host
Experimental system
Location
Not specified
Supporting text

Both strains caused persistent diarrhea in mice and severe watery diarrhea, intestinal lesions, and death within 48 h in piglets.

Method
clinical observation of diarrhea and mortality | necropsy/histopathology of intestines
Experimental system
animal model (1-day-old piglets, controlled experimental infection)
OVE11674
Key finding

In piglets, HD2023 had higher lung viral RNA/antigen levels than intestines, and lung infectious titers exceeded those in XXW2023-infected piglets.

Virus
Host
Location
Not specified
Supporting text

Viral RNA and antigen levels in the lungs of HD2023-infected piglets exceeded those in their intestines, and the infectious virus titer in their lungs was significantly higher than that in the lungs of XXW2023-infected piglets.

Method
viral RNA quantification | antigen detection | infectious virus titration
Experimental system
animal model (piglets, controlled experimental infection)
OVE11671
Key finding

Porcine rotavirus strains XXW2023 (G9P[7]) and HD2023 (G1P[7]) caused persistent diarrhea in 7-day-old mice.

Virus
Host
Location
Not specified
Supporting text

Pathogenicity was evaluated in 7-day-old mice and 1-day-old piglets. Both strains caused persistent diarrhea in mice...

Method
clinical observation of diarrhea over time
Experimental system
animal model (7-day-old mice, controlled experimental infection)
OVE11673
Key finding

The strains showed distinct tissue tropism in experimentally infected piglets: XXW2023 was enterotropic whereas HD2023 showed pulmonary tropism.

Virus
Host
Location
Not specified
Supporting text

The strains exhibited distinct tissue tropism, with XXW2023 being enterotropic and HD2023 showing pulmonary tropism.

Method
tissue tropism assessment (comparative analysis across organs)
Experimental system
animal model (piglets, controlled experimental infection)
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE11669
Key finding

Two porcine rotavirus A strains, XXW2023 (G9P[7]) and HD2023 (G1P[7]), are human-porcine reassortants with VP1, VP3, and NSP1 derived from human rotaviruses.

Virus
Host
Not specified
Location
Not specified
Supporting text

Genomic analysis revealed that both strains were human-porcine reassortants, with VP1, VP3, and NSP1 genes closely related to human rotaviruses.

Event type
reassortment
Genes or segments
VP1 | VP3 | NSP1
OVE11670
Key finding

Intragenic recombination was detected in the VP4 and VP6 genes of the PoRVA strains XXW2023 (G9P[7]) and HD2023 (G1P[7]).

Virus
Host
Not specified
Location
Not specified
Supporting text

Intragenic recombination was identified in the VP4 and VP6 genes. In this study, two PoRVA strains, XXW2023 (G9P[7]) and HD2023 (G1P[7]), were isolated from diarrheic piglets in Guangdong Province, China.

Event type
recombination
Genes or segments
VP4 | VP6