Genomic analysis of human rotavirus strains G6P[14] and G11P[25] isolated from Kolkata in 2009 reveals interspecies transmission and complex reassortment events.

Satarupa Mullick1 Anupam Mukherjee Santanu Ghosh Gururaja P Pazhani Dipika Sur Byomkesh Manna James P Nataro Myron M Levine Thandavarayan Ramamurthy Mamta Chawla-Sarkar
Affiliations 1 institutions
  1. National Institute of Cholera and Enteric Diseases, Kolkata, India.

Abstract

In a community based case-control study in Kolkata, India, in 2009, two human rotaviruses with uncommon genotypes G6P[14] and G11P[25] were identified, having bovine and porcine characteristics respectively. Strain N-1/2009 with G6P[14] and strain N-38/2009 with G11P[25] genotypes, were isolated from a 13months aged boy who was asymptomatic and a 10months old girl with severe diarrhea respectively. The remaining 9 gene segments of these two strains were analyzed to find the exact origin of these unusual rotaviruses, and the origin of these two strains from bovine/porcine rotaviruses was apparent. This study identifies zoonotic transmission and single and multiple reassortment events as mechanisms driving the diversity of human rotaviruses. This study indicates interspecies transmission between human and animal rotaviruses causes single or multiple reassortment and thus contribute to the genetic diversity of rotavirus.

Supporting text Virus Host Location
Genome, Viral 317 Animals 1948 Capsid Proteins 21 Case-Control Studies 3 Humans 1440 India 22 Molecular Sequence Data 160 Phylogeny 805 Reassortant Viruses 103 Rotavirus 65 Rotavirus Infections 61

Evidence records

4 total
Zoonotic Surveillance
2 records · 1 evidence types
Evidence type
2 records
OVE1343
Key finding

Rotavirus strain G6P[14] (isolate N-1/2009) was isolated from a 13-month-old boy in Kolkata in 2009.

Virus
Host
Location
Not specified
Supporting text

Strain N-1/2009 with G6P[14] genotype was isolated from a 13months aged boy who was asymptomatic.

Sample type
human stool sample
OVE1344
Key finding

Rotavirus strain G11P[25] (isolate N-38/2009) was isolated from a 10-month-old girl with severe diarrhea in Kolkata in 2009.

Virus
Host
Location
Not specified
Supporting text

Strain N-38/2009 with G11P[25] genotype was isolated from a 10months old girl with severe diarrhea.

Sample type
human stool sample
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE1347
Key finding

Human rotavirus strain G6P[14] with bovine characteristics was identified in Kolkata, India, indicating animal-to-human spillover of bovine rotavirus.

Virus
Host
Location
Supporting text

In a community based case-control study in Kolkata, India, in 2009, two human rotaviruses with uncommon genotypes G6P[14] and G11P[25] were identified, having bovine and porcine characteristics respectively.

Event type
reassortment
OVE1348
Key finding

Human rotavirus strain G11P[25] with porcine characteristics was detected in Kolkata, India, supporting animal-to-human transmission from pigs.

Virus
Host
Location
Supporting text

In a community based case-control study in Kolkata, India, in 2009, two human rotaviruses with uncommon genotypes G6P[14] and G11P[25] were identified, having bovine and porcine characteristics respectively.

Event type
reassortment