The genesis and evolution of H9N2 influenza viruses in poultry from southern China, 2000 to 2005.

K M Xu1 G J D Smith J Bahl L Duan H Tai D Vijaykrishna J Wang J X Zhang K S Li X H Fan R G Webster H Chen J S M Peiris Y Guan
Affiliations 1 institutions
  1. International Institute of Infection and Immunity, Shantou University, Guangdong, China, and Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

Abstract

H9N2 influenza viruses have become established in terrestrial poultry in different Asian countries over the last 2 decades. Our previous study demonstrated that quail harbor increasingly diverse novel H9N2 reassortants, including both Chicken/Beijing/1/94 (Ck/Bei-like) and Quail/Hong Kong/G1/97 (G1-like) viruses. However, since 1999, the genesis and evolution of H9N2 viruses in different types of poultry have not been investigated systematically. In the present study, H9N2 viruses isolated from chickens, ducks, and other minor poultry species were characterized genetically and antigenically. Our findings demonstrate that Ck/Bei-like H9N2 viruses have been introduced into many different types of poultry in southern China, including quail, partridges, chukar, pheasant, guinea fowl, and domestic ducks, while G1-like viruses were commonly detected in quail, less frequently detected in other minor poultry species, and not detected in chickens and ducks. Genetic analysis revealed 35 genotypes of H9N2 viruses, including 14 novel genotypes that have not been recognized before. Our results also suggested that two-way interspecies transmission exists between different types of poultry. Our study demonstrates that the long-term cocirculation of multiple virus lineages (e.g., H5N1 and H9N2 viruses) in different types of poultry has facilitated the frequent reassortment events that are mostly responsible for the current great genetic diversity in H9N2 and H5N1 influenza viruses in this region. This situation favors the emergence of influenza viruses with pandemic potential.

Supporting text Virus Host Location
Evolution, Molecular 176 Animals 1948 Antigens, Viral 49 Base Sequence 52 China 229 Genes, Viral 37 Genetic Variation 127 Genotype 137 Humans 1440 Influenza A Virus, H9N2 Subtype 71 Influenza in Birds 341 Molecular Sequence Data 160 Phylogeny 805 Poultry 112 Serotyping 4

Evidence records

6 total
Zoonotic Surveillance
3 records · 2 evidence types
Evidence type
1 records
Evidence type
2 records
OVE455
Key finding

Ck/Bei-like H9N2 viruses were detected in multiple poultry species including quail, partridges, chukar, pheasant, guinea fowl, and domestic ducks in southern China.

Virus
Host
Location
Supporting text

Ck/Bei-like H9N2 viruses have been introduced into many different types of poultry in southern China, including quail, partridges, chukar, pheasant, guinea fowl, and domestic ducks.

Method
virus detection | genetic and antigenic characterization
Geographic raw
southern China
Country inferred
CHN
OVE456
Key finding

G1-like H9N2 viruses were commonly detected in quail, less frequently in other minor poultry species, and not detected in chickens or ducks.

Virus
Host
Location
Not specified
Supporting text

G1-like viruses were commonly detected in quail, less frequently detected in other minor poultry species, and not detected in chickens and ducks.

Method
virus detection | genetic and antigenic characterization
Genomic Evolution
3 records · 2 evidence types
Evidence type
1 records
OVE458
Key finding

Frequent reassortment between co-circulating H5N1 and H9N2 influenza viruses in poultry in southern China generated the observed genetic diversity of these subtypes.

Virus
Host
Not specified
Location
Not specified
Supporting text

The long-term cocirculation of multiple virus lineages (e.g., H5N1 and H9N2 viruses) in different types of poultry has facilitated the frequent reassortment events that are mostly responsible for the current great genetic diversity in H9N2 and H5N1 influenza viruses in this region.

Event type
reassortment
Evidence type
2 records
OVE457
Key finding

Two-way interspecies transmission of H9N2 influenza viruses occurred among different types of poultry in southern China.

Virus
Host
Location
Supporting text

Our findings demonstrate that Ck/Bei-like H9N2 viruses have been introduced into many different types of poultry in southern China, including quail, partridges, chukar, pheasant, guinea fowl, and domestic ducks. Our results also suggested that two-way interspecies transmission exists between different types of poultry.

Analysis methods
virus isolation | genetic analysis | antigenic characterization
OVE459
Key finding

Genetic analysis of H9N2 influenza viruses from different types of poultry in southern China revealed 35 genotypes, including 14 novel ones, demonstrating ongoing lineage diversification.

Virus
Host
Not specified
Location
Not specified
Supporting text

Genetic analysis revealed 35 genotypes of H9N2 viruses, including 14 novel genotypes that have not been recognized before.

Analysis methods
genetic analysis