SARS-CoV-2 in mink farms in British Columbia, Canada: A report of two outbreaks in 2020-2021.

Adrianna Paiero1 Emily Newhouse1,2 Elaine Chan3,4 Veronic Clair2,3 Shannon Russell2,3 James Zlonsnik2,3 Natalie Prystajecky2,3 Erin Fraser2,3
Affiliations 4 institutions
  1. Fraser Health Authority, Surrey, BC.
  2. University of British Columbia, Vancouver, BC.
  3. British Columbia Centre for Disease Control, Vancouver, BC.
  4. Canadian Field Epidemiology Program, Centre for Emergency Preparedness and Response, Public Health Agency of Canada, Ottawa, ON.

Abstract

Since April 2020, mink have been recognized as a potential reservoir for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and a potential source of new variants. The objective of this report is to describe the epidemiological investigation and public health response to two coronavirus disease 2019 (COVID-19) outbreaks that involved both humans and farmed mink. An outbreak was declared on December 4, 2020, following detection of two COVID-19-positive farmworkers and elevated mink mortality on a mink farm (Farm 1) in British Columbia. The second cluster was detected on Farm 3 following detection of 1) a COVID-19 case among farm staff on April 2, 2021, 2) an indeterminate result from farm staff on May 11, 2021, and 3) subsequent SARS-CoV-2-positive mink in May 2021. Quarantine of infected farms, isolation of workers and their close contacts, and introduction of enhanced infection control practises were implemented to break chains of transmission. Among mink farmworkers, 11 cases were identified at Farm 1 and 6 cases were identified at Farm 3. On both Farm 1 and Farm 3, characteristic COVID-19 symptoms were present in farm employees before signs were observed in the minks. The viral sequences from mink and human samples demonstrated close genetic relation. Phylogenetic analyses identified mink intermediates linking human cases, suggesting anthropo-zoonotic transmission. These were the first COVID-19 outbreaks that included infected mink herds in Canada and identified potential anthropogenic and zoonotic transmission of SARS-CoV-2. We provide insight into the positive impact of regulatory control measures and surveillance to reduce the spillover of SARS-CoV-2 mink variants into the general population.

Supporting text Virus Host Location
COVID-19 467 mink 58 One Health 98 SARS-CoV-2 550 spillover 105 zoonotic disease 19

Evidence records

7 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE7077
Key finding

SARS-CoV-2 RNA was detected in mink during outbreaks on farms in British Columbia, Canada.

Virus
Host
Location
Supporting text

An outbreak was declared on December 4, 2020, following detection of two COVID-19-positive farmworkers and elevated mink mortality on a mink farm (Farm 1) in British Columbia. The second cluster was detected on Farm 3 following detection of 1) a COVID-19 case among farm staff on April 2, 2021, 2) an indeterminate result from farm staff on May 11, 2021, and 3) subsequent SARS-CoV-2-positive mink in May 2021.

Method
viral RNA detection | PCR testing
Sample type
farmed mink specimens
Geographic raw
British Columbia, Canada
Country inferred
CAN
Evidence type
1 records
OVE7083
Key finding

Mink in British Columbia, Canada were recognized as potential reservoirs for SARS-CoV-2 and possible sources of new viral variants.

Virus
Host
Location
Supporting text

SARS-CoV-2 in mink farms in British Columbia, Canada: A report of two outbreaks in 2020-2021. Since April 2020, mink have been recognized as a potential reservoir for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and a potential source of new variants.

Method
epidemiological investigation | phylogenetic analysis
Geographic raw
British Columbia | Canada
Country inferred
CAN
Transmission Evidence
4 records · 3 evidence types
Evidence type
1 records
OVE7081
Key finding

Viral sequences from mink and human samples in British Columbia showed close genetic relation consistent with mink-to-human transmission potential.

Virus
Host
Location
Supporting text

The viral sequences from mink and human samples demonstrated close genetic relation. Phylogenetic analyses identified mink intermediates linking human cases, suggesting anthropo-zoonotic transmission.

Method
phylogenetic analysis | genomic sequencing
Study design
outbreak investigation with phylogenetic analysis
Transmission direction
animal-to-human
Geographic raw
British Columbia
Country inferred
CAN
Evidence type
2 records
OVE7078
Key finding

Two SARS-CoV-2 outbreaks were investigated on mink farms in British Columbia involving farmworkers and mink, with linked human and animal cases during 2020–2021.

Virus
Host
Location
Supporting text

An outbreak was declared on December 4, 2020, following detection of two COVID-19-positive farmworkers and elevated mink mortality on a mink farm (Farm 1) in British Columbia. The second cluster was detected on Farm 3 following detection of 1) a COVID-19 case among farm staff on April 2, 2021, 2) an indeterminate result from farm staff on May 11, 2021, and 3) subsequent SARS-CoV-2-positive mink in May 2021.

Method
epidemiological investigation | public health response | viral sequencing | phylogenetic analysis | case detection
Transmission direction
human-to-animal
Geographic raw
British Columbia, Canada
Country inferred
CAN
Outbreak setting
mink farms
Outbreak time
December 2020 and April–May 2021
Outbreak scale
Two outbreaks involving Farm 1 and Farm 3; 11 human cases at Farm 1 and 6 human cases at Farm 3
OVE7079
Key finding

Phylogenetic analysis in the British Columbia mink farm outbreaks showed SARS-CoV-2 sequences from mink and humans were closely related, indicating possible anthropogenic and zoonotic transmission links.

Virus
Host
Location
Supporting text

The viral sequences from mink and human samples demonstrated close genetic relation. Phylogenetic analyses identified mink intermediates linking human cases, suggesting anthropo-zoonotic transmission.

Method
phylogenetic analysis | genomic sequencing | epidemiological investigation
Transmission direction
cross-species transmission
Geographic raw
British Columbia, Canada
Country inferred
CAN
Outbreak setting
mink farms
Outbreak time
2020–2021
Outbreak scale
Two outbreaks on Farm 1 and Farm 3
Evidence type
1 records
OVE7080
Key finding

Phylogenetic and epidemiological evidence indicated human-to-mink transmission of SARS-CoV-2 during outbreaks on British Columbia mink farms.

Virus
Host
Location
Supporting text

An outbreak was declared on December 4, 2020, following detection of two COVID-19-positive farmworkers and elevated mink mortality on a mink farm (Farm 1) in British Columbia. On both Farm 1 and Farm 3, characteristic COVID-19 symptoms were present in farm employees before signs were observed in the minks.

Method
phylogenetic analysis | genomic sequencing
Study design
outbreak investigation with phylogenetic analysis
Transmission direction
human-to-animal
Geographic raw
British Columbia
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE7082
Key finding

Phylogenetic analysis showed that SARS-CoV-2 sequences from mink and human samples in British Columbia were closely related, indicating genetic linkage between outbreaks in both host species.

Virus
Host
Location
Not specified
Supporting text

The viral sequences from mink and human samples demonstrated close genetic relation. Phylogenetic analyses identified mink intermediates linking human cases, suggesting anthropo-zoonotic transmission.

Analysis methods
phylogenetic analysis