Severe pigeon paramyxovirus 1 infection in a human case with probable post-COVID-19 condition.

Shujuan Cui1,2 Hui Xiong3 Zhaomin Feng1,2 Yanhui Chu4 Chengli Que5 Jingning Qin4 Yang Pan1 Kunyao Yu5 Lei Jia1 Xi Yao6 Jiping Liao5 Da Huo1 Cuiyan Guo5 Hao Zhao1 Meng Xu3 Yanan Tian3 Qing Peng7 Fu Li1 Hui Xu1 Runsheng Hong5 Daitao Zhang1,2 Guangfa Wang5 Peng Yang1,2 George F Gao8,9 Quanyi Wang1,2,10
Affiliations 10 institutions
  1. Beijing Center for Disease Prevention and Control, Beijing, People's Republic of China.
  2. Beijing Research Center for Respiratory Infectious Diseases, Beijing, People's Republic of China.
  3. Department of Emergency, Peking University First Hospital, Beijing, People's Republic of China.
  4. Xicheng District Center for Disease Prevention and Control, Beijing, People's Republic of China.
  5. Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People's Republic of China.
  6. Department of infection control, Peking University First Hospital, Beijing, People's Republic of China.
  7. Department of neurology, Peking University First Hospital, Beijing, People's Republic of China.
  8. CAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, People's Republic of China.
  9. University of Chinese Academy of Sciences, Beijing, People's Republic of China.
  10. School of Public Health, Capital Medical University, Beijing, People's Republic of China.

Abstract

Pigeon paramyxovirus 1 (PPMV-1) is an antigenic host variant of avian paramyxovirus 1. Sporadic outbreaks of PPMV-1 infection have occurred in pigeons in China; however, few cases of human PPMV-1 infection have been reported. The purpose of this article is to report a case of severe human PPMV-1 infection in an individual with probable post-COVID-19 syndrome (long COVID) who presented with rapidly progressing pulmonary infection. The patient was a 66-year-old man who was admitted to the intensive care unit 11 days after onset of pneumonia and recovered 64 days after onset. PPMV-1 was isolated from the patient's sputum and in cloacal smear samples from domesticated pigeons belonging to the patient's neighbour. Residual severe acute respiratory syndrome coronavirus 2 was detected in respiratory and anal swab samples from the patient. Sequencing analyses revealed that the PPMV-1 genome belonged to genotype VI.2.1.1.2.2 and had the 112RRQKRF117 motif in the cleavage site of the fusion protein, which is indicative of high virulence. This case of cross-species transmission of PPMV-1 from a pigeon to a human highlights the risk of severe PPMV-1 infection in immunocompromised patients, especially those with long COVID. Enhanced surveillance for increased risk of severe viral infection is warranted in this population.

Supporting text Virus Host Location
cross-species 10 human PPMV-1 infection 1 Pigeon paramyxovirus 1 1 severe acute respiratory syndrome coronavirus 2 20 surveillance 60 COVID-19 425 Aged 31 Animals 1948 Antigenic Variation 14 Columbidae 8 Humans 1440 Male 224 Newcastle disease virus 5 Post-Acute COVID-19 Syndrome 2

Evidence records

5 total
Zoonotic Surveillance
3 records · 2 evidence types
Evidence type
2 records
OVE7253
Key finding

PPMV-1 was isolated from cloacal smear samples of domesticated pigeons belonging to the patient's neighbour.

Virus
Host
Location
Not specified
Supporting text

PPMV-1 was isolated ... in cloacal smear samples from domesticated pigeons belonging to the patient's neighbour.

Sample type
cloacal smear samples
Evidence type
1 records
OVE7257
Key finding

Residual SARS-CoV-2 was detected in respiratory and anal swab samples from the patient described in the study.

Virus
Host
Location
Not specified
Supporting text

Residual severe acute respiratory syndrome coronavirus 2 was detected in respiratory and anal swab samples from the patient.

Method
viral detection
Sample type
respiratory swab | anal swab
Transmission Evidence
1 records · 1 evidence types
Evidence type
1 records
OVE7254
Key finding

A human case of severe infection was caused by pigeon paramyxovirus 1 (PPMV‑1) transmitted from a pigeon to a human.

Virus
Host
Location
Not specified
Supporting text

This case of cross‑species transmission of PPMV‑1 from a pigeon to a human highlights the risk of severe PPMV‑1 infection in immunocompromised patients.

Method
virus isolation | genome sequencing
Study design
case report
Transmission direction
animal-to-human
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE7255
Key finding

Phylogenetic analysis showed that the PPMV-1 genome from this case belonged to genotype VI.2.1.1.2.2.

Virus
Host
Not specified
Location
Not specified
Supporting text

Sequencing analyses revealed that the PPMV-1 genome belonged to genotype VI.2.1.1.2.2.

Analysis methods
sequencing analysis