Human infection of avian influenza A H3N8 virus and the viral origins: a descriptive study.
Rengui Yang1
Honglei Sun2
Feng Gao3
Kaiwei Luo4
Zheng Huang1
Qi Tong2
Hao Song5
Qiqi Han2
Jiyu Liu2
Yu Lan6
Jianxun Qi7
Han Li2
Shuilian Chen1
Mingzhong Xu1
Jinsong Qiu1
Ge Zeng4
Xixing Zhang1
Chaoyang Huang4
Ruiqing Pei1
Zhifei Zhan4
Beiwei Ye6
Yaxin Guo6
Yinzhu Zhou1
Wen Ye1
Dong Yao1
Min Ren8
Bo Li9
Jizhe Yang2
Yanan Wang7
Juan Pu2
Yipeng Sun2
Yi Shi7
William J Liu6
Xinhua Ou1
George F Gao10,6
Lidong Gao4
Jinhua Liu11
Affiliations11 institutions
Changsha Municipal Center for Disease Control and Prevention, Changsha, China.
Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China.
Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
Hunan Workstation for Emerging Infectious Disease Control and Prevention, Chinese Academy of Medical Sciences, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
Research Network of Immunity and Health, Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China.
Chinese National Influenza Center, NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.
Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Kaifu District Center for Disease Control and Prevention, Changsha, China.
Department of Pediatric, The First Hospital of Changsha, Changsha, China.
Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China. Electronic address: [email protected].
The H3N8 avian influenza virus (AIV) has been circulating in wild birds, with occasional interspecies transmission to mammals. The first human infection of H3N8 subtype occurred in Henan Province, China, in April, 2022. We aimed to investigate clinical, epidemiological, and virological data related to a second case identified soon afterwards in Hunan Province, China. We analysed clinical, epidemiological, and virological data for a 5-year-old boy diagnosed with H3N8 AIV infection in May, 2022, during influenza-like illness surveillance in Changsha City, Hunan Province, China. H3N8 virus strains from chicken flocks from January, 2021, to April, 2022, were retrospectively investigated in China. The genomes of the viruses were sequenced for phylogenetic analysis of all the eight gene segments. We evaluated the receptor-binding properties of the H3N8 viruses by using a solid-phase binding assay. We used sequence alignment and homology-modelling methods to study the effect of specific mutations on the human receptor-binding properties. We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases. The clinical symptoms of the patient were mild, including fever, sore throat, chills, and a runny nose. The patient's fever subsided on the same day of hospitalisation, and these symptoms disappeared 7 days later, presenting mild influenza symptoms, with no pneumonia. An H3N8 virus was isolated from the patient's throat swab specimen. The novel H3N8 virus causing human infection was first detected in a chicken farm in Guangdong Province in December, 2021, and subsequently emerged in several provinces. Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin. The neuraminidase gene belongs to North American lineage, and might have originated in Alaska (USA) and been transferred by migratory birds along the east Asian flyway. The six internal genes had originated from G57 genotype H9N2 AIVs that were endemic in chicken flocks. Reassortment events might have occurred in domestic ducks or chickens in the Pearl River Delta area in southern China. The novel H3N8 viruses possess the ability to bind to both avian-type and human-type sialic acid receptors, which pose a threat to human health. No poultry worker in our study was positive for antibodies against the H3N8 virus. The novel H3N8 virus that caused human infection had originated from chickens, a typical spillover. The virus is a triple reassortment strain with the Eurasian avian H3 gene, North American avian N8 gene, and dynamic internal genes of the H9N2 viruses. The virus already possesses binding ability to human-type receptors, though the risk of the H3N8 virus infection in humans was low, and the cases are rare and sporadic at present. Considering the pandemic potential, comprehensive surveillance of the H3N8 virus in poultry flocks and the environment is imperative, and poultry-to-human transmission should be closely monitored. National Natural Science Foundation of China, National Key Research and Development Program of China, Strategic Priority Research Program of the Chinese Academy of Sciences, Hunan Provincial Innovative Construction Special Fund: Emergency response to COVID-19 outbreak, Scientific Research Fund of Hunan Provincial Health Department, and the Hunan Provincial Health Commission Foundation.
COVID-19Influenza A Virus, H3N8 SubtypeInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsInfluenza, HumanAnimalsChickensChild, PreschoolDucksHumansMammalsPhylogenyPoultryRetrospective Studies
Structured evidence records
Evidence records
7 total
Zoonotic Surveillance2 records
Zoonotic SurveillanceExtraction confidence 0.90
Key finding
Retrospective surveillance detected H3N8 avian influenza viruses in chicken flocks in China, indicating circulation prior to human infection events.
We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases.
Method
serological surveillance
Geographic raw
Hunan Province, China
Country inferred
China
Genomic Evolution1 records
Genomic EvolutionExtraction confidence 0.90
Key finding
Phylogenetic and genomic analyses showed that the human-infecting H3N8 virus in China was a triple reassortant combining H3 from duck AIVs, N8 from a North American lineage, and internal genes from H9N2 chicken viruses.
The genomes of the viruses were sequenced for phylogenetic analysis of all the eight gene segments. Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin. The neuraminidase gene belongs to North American lineage, and might have originated in Alaska (USA) and been transferred by migratory birds along the east Asian flyway. The six internal genes had originated from G57 genotype H9N2 AIVs that were endemic in chicken flocks.
H3N8 avian influenza viruses were shown to bind both avian-type and human-type sialic acid receptors, demonstrating dual receptor usage consistent with human infection potential.
We evaluated the receptor-binding properties of the H3N8 viruses by using a solid-phase binding assay... The novel H3N8 viruses possess the ability to bind to both avian-type and human-type sialic acid receptors.
Recombination Or ReassortmentExtraction confidence 0.95
Key finding
The human-infecting H3N8 virus in China is a triple reassortant combining an H3 gene from Eurasian avian viruses, an N8 gene from North American avian lineage, and internal genes from H9N2 chicken viruses.
Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin, the neuraminidase gene belongs to a North American lineage, and the six internal genes derived from G57 genotype H9N2 AIVs endemic in chickens. The virus is a triple reassortment strain with the Eurasian avian H3 gene, North American avian N8 gene, and dynamic internal genes of the H9N2 viruses.
Event type
reassortment
Genes or segments
HA; NA; internal genes
Serological Evidence1 records
Serological EvidenceExtraction confidence 0.80
Key finding
No antibodies against influenza A H3N8 virus were detected in poultry workers from Henan and Hunan Provinces, indicating absence of serological evidence of exposure.
We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases. No poultry worker in our study was positive for antibodies against the H3N8 virus.
Method
serological surveillance
Sample type
serum
Spillover Event1 records
Spillover EventExtraction confidence 0.95
Key finding
H3N8 avian influenza virus infected a human, originating from chickens.