Literature detail

Human infection of avian influenza A H3N8 virus and the viral origins: a descriptive study.

Rengui Yang1 Honglei Sun2 Feng Gao3 Kaiwei Luo4 Zheng Huang1 Qi Tong2 Hao Song5 Qiqi Han2 Jiyu Liu2 Yu Lan6 Jianxun Qi7 Han Li2 Shuilian Chen1 Mingzhong Xu1 Jinsong Qiu1 Ge Zeng4 Xixing Zhang1 Chaoyang Huang4 Ruiqing Pei1 Zhifei Zhan4 Beiwei Ye6 Yaxin Guo6 Yinzhu Zhou1 Wen Ye1 Dong Yao1 Min Ren8 Bo Li9 Jizhe Yang2 Yanan Wang7 Juan Pu2 Yipeng Sun2 Yi Shi7 William J Liu6 Xinhua Ou1 George F Gao10,6 Lidong Gao4 Jinhua Liu11
Affiliations 11 institutions
  1. Changsha Municipal Center for Disease Control and Prevention, Changsha, China.
  2. Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China.
  3. Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
  4. Hunan Workstation for Emerging Infectious Disease Control and Prevention, Chinese Academy of Medical Sciences, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
  5. Research Network of Immunity and Health, Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China.
  6. Chinese National Influenza Center, NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.
  7. Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
  8. Kaifu District Center for Disease Control and Prevention, Changsha, China.
  9. Department of Pediatric, The First Hospital of Changsha, Changsha, China.
  10. Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
  11. Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China. Electronic address: [email protected].
PMID 36115379 2022 Lancet Microbe eng ppublish
PubMed DOI Browse context

Article

Publication summary

The H3N8 avian influenza virus (AIV) has been circulating in wild birds, with occasional interspecies transmission to mammals. The first human infection of H3N8 subtype occurred in Henan Province, China, in April, 2022. We aimed to investigate clinical, epidemiological, and virological data related to a second case identified soon afterwards in Hunan Province, China. We analysed clinical, epidemiological, and virological data for a 5-year-old boy diagnosed with H3N8 AIV infection in May, 2022, during influenza-like illness surveillance in Changsha City, Hunan Province, China. H3N8 virus strains from chicken flocks from January, 2021, to April, 2022, were retrospectively investigated in China. The genomes of the viruses were sequenced for phylogenetic analysis of all the eight gene segments. We evaluated the receptor-binding properties of the H3N8 viruses by using a solid-phase binding assay. We used sequence alignment and homology-modelling methods to study the effect of specific mutations on the human receptor-binding properties. We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases. The clinical symptoms of the patient were mild, including fever, sore throat, chills, and a runny nose. The patient's fever subsided on the same day of hospitalisation, and these symptoms disappeared 7 days later, presenting mild influenza symptoms, with no pneumonia. An H3N8 virus was isolated from the patient's throat swab specimen. The novel H3N8 virus causing human infection was first detected in a chicken farm in Guangdong Province in December, 2021, and subsequently emerged in several provinces. Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin. The neuraminidase gene belongs to North American lineage, and might have originated in Alaska (USA) and been transferred by migratory birds along the east Asian flyway. The six internal genes had originated from G57 genotype H9N2 AIVs that were endemic in chicken flocks. Reassortment events might have occurred in domestic ducks or chickens in the Pearl River Delta area in southern China. The novel H3N8 viruses possess the ability to bind to both avian-type and human-type sialic acid receptors, which pose a threat to human health. No poultry worker in our study was positive for antibodies against the H3N8 virus. The novel H3N8 virus that caused human infection had originated from chickens, a typical spillover. The virus is a triple reassortment strain with the Eurasian avian H3 gene, North American avian N8 gene, and dynamic internal genes of the H9N2 viruses. The virus already possesses binding ability to human-type receptors, though the risk of the H3N8 virus infection in humans was low, and the cases are rare and sporadic at present. Considering the pandemic potential, comprehensive surveillance of the H3N8 virus in poultry flocks and the environment is imperative, and poultry-to-human transmission should be closely monitored. National Natural Science Foundation of China, National Key Research and Development Program of China, Strategic Priority Research Program of the Chinese Academy of Sciences, Hunan Provincial Innovative Construction Special Fund: Emergency response to COVID-19 outbreak, Scientific Research Fund of Hunan Provincial Health Department, and the Hunan Provincial Health Commission Foundation.

COVID-19 Influenza A Virus, H3N8 Subtype Influenza A Virus, H9N2 Subtype Influenza in Birds Influenza, Human Animals Chickens Child, Preschool Ducks Humans Mammals Phylogeny Poultry Retrospective Studies

Structured evidence records

Evidence records

7 total
2 records
Extraction confidence 0.90
Key finding

Retrospective surveillance detected H3N8 avian influenza viruses in chicken flocks in China, indicating circulation prior to human infection events.

Virus
Location
Supporting text

H3N8 virus strains from chicken flocks from January, 2021, to April, 2022, were retrospectively investigated in China.

Geographic raw
China
Country inferred
China
Extraction confidence 0.85
Key finding

Serological surveillance among poultry workers in Hunan and Henan provinces found no evidence of H3N8 infection, suggesting low human exposure.

Virus
Location
Supporting text

We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases.

Method
serological surveillance
Geographic raw
Hunan Province, China
Country inferred
China
1 records
Extraction confidence 0.90
Key finding

Phylogenetic and genomic analyses showed that the human-infecting H3N8 virus in China was a triple reassortant combining H3 from duck AIVs, N8 from a North American lineage, and internal genes from H9N2 chicken viruses.

Virus
Location
Not specified
Supporting text

The genomes of the viruses were sequenced for phylogenetic analysis of all the eight gene segments. Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin. The neuraminidase gene belongs to North American lineage, and might have originated in Alaska (USA) and been transferred by migratory birds along the east Asian flyway. The six internal genes had originated from G57 genotype H9N2 AIVs that were endemic in chicken flocks.

Genes or proteins
haemagglutinin; neuraminidase; internal genes
Analysis methods
genome sequencing; phylogenetic analysis; sequence alignment
1 records
Extraction confidence 0.90
Key finding

H3N8 avian influenza viruses were shown to bind both avian-type and human-type sialic acid receptors, demonstrating dual receptor usage consistent with human infection potential.

Virus
Location
Not specified
Supporting text

We evaluated the receptor-binding properties of the H3N8 viruses by using a solid-phase binding assay... The novel H3N8 viruses possess the ability to bind to both avian-type and human-type sialic acid receptors.

Method
solid-phase binding assay; sequence alignment; homology-modelling
Receptors
sialic acid receptors
1 records
Extraction confidence 0.95
Key finding

The human-infecting H3N8 virus in China is a triple reassortant combining an H3 gene from Eurasian avian viruses, an N8 gene from North American avian lineage, and internal genes from H9N2 chicken viruses.

Host
Not specified
Location
Not specified
Supporting text

Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin, the neuraminidase gene belongs to a North American lineage, and the six internal genes derived from G57 genotype H9N2 AIVs endemic in chickens. The virus is a triple reassortment strain with the Eurasian avian H3 gene, North American avian N8 gene, and dynamic internal genes of the H9N2 viruses.

Event type
reassortment
Genes or segments
HA; NA; internal genes
1 records
Extraction confidence 0.80
Key finding

No antibodies against influenza A H3N8 virus were detected in poultry workers from Henan and Hunan Provinces, indicating absence of serological evidence of exposure.

Virus
Location
Not specified
Supporting text

We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases. No poultry worker in our study was positive for antibodies against the H3N8 virus.

Method
serological surveillance
Sample type
serum
1 records
Extraction confidence 0.95
Key finding

H3N8 avian influenza virus infected a human, originating from chickens.

Virus
Location
Supporting text

The novel H3N8 virus that caused human infection had originated from chickens, a typical spillover.

Method
virological data analysis; phylogenetic analysis; sequence alignment; homology-modelling; serological surveillance
Study design
descriptive study
Transmission direction
animal-to-human
Geographic raw
China
Country inferred
China