Human infection of avian influenza A H3N8 virus and the viral origins: a descriptive study.

Rengui Yang1 Honglei Sun2 Feng Gao3 Kaiwei Luo4 Zheng Huang1 Qi Tong2 Hao Song5 Qiqi Han2 Jiyu Liu2 Yu Lan6 Jianxun Qi7 Han Li2 Shuilian Chen1 Mingzhong Xu1 Jinsong Qiu1 Ge Zeng4 Xixing Zhang1 Chaoyang Huang4 Ruiqing Pei1 Zhifei Zhan4 Beiwei Ye6 Yaxin Guo6 Yinzhu Zhou1 Wen Ye1 Dong Yao1 Min Ren8 Bo Li9 Jizhe Yang2 Yanan Wang7 Juan Pu2 Yipeng Sun2 Yi Shi7 William J Liu6 Xinhua Ou1 George F Gao10,6 Lidong Gao4 Jinhua Liu11
Affiliations 11 institutions
  1. Changsha Municipal Center for Disease Control and Prevention, Changsha, China.
  2. Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China.
  3. Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
  4. Hunan Workstation for Emerging Infectious Disease Control and Prevention, Chinese Academy of Medical Sciences, Hunan Provincial Center for Disease Control and Prevention, Changsha, China.
  5. Research Network of Immunity and Health, Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China.
  6. Chinese National Influenza Center, NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.
  7. Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
  8. Kaifu District Center for Disease Control and Prevention, Changsha, China.
  9. Department of Pediatric, The First Hospital of Changsha, Changsha, China.
  10. Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
  11. Key Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China. Electronic address: [email protected].

Abstract

The H3N8 avian influenza virus (AIV) has been circulating in wild birds, with occasional interspecies transmission to mammals. The first human infection of H3N8 subtype occurred in Henan Province, China, in April, 2022. We aimed to investigate clinical, epidemiological, and virological data related to a second case identified soon afterwards in Hunan Province, China. We analysed clinical, epidemiological, and virological data for a 5-year-old boy diagnosed with H3N8 AIV infection in May, 2022, during influenza-like illness surveillance in Changsha City, Hunan Province, China. H3N8 virus strains from chicken flocks from January, 2021, to April, 2022, were retrospectively investigated in China. The genomes of the viruses were sequenced for phylogenetic analysis of all the eight gene segments. We evaluated the receptor-binding properties of the H3N8 viruses by using a solid-phase binding assay. We used sequence alignment and homology-modelling methods to study the effect of specific mutations on the human receptor-binding properties. We also conducted serological surveillance to detect the H3N8 infections among poultry workers in the two provinces with H3N8 cases. The clinical symptoms of the patient were mild, including fever, sore throat, chills, and a runny nose. The patient's fever subsided on the same day of hospitalisation, and these symptoms disappeared 7 days later, presenting mild influenza symptoms, with no pneumonia. An H3N8 virus was isolated from the patient's throat swab specimen. The novel H3N8 virus causing human infection was first detected in a chicken farm in Guangdong Province in December, 2021, and subsequently emerged in several provinces. Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events. The haemagglutinin gene could have originated from H3Ny AIVs of duck origin. The neuraminidase gene belongs to North American lineage, and might have originated in Alaska (USA) and been transferred by migratory birds along the east Asian flyway. The six internal genes had originated from G57 genotype H9N2 AIVs that were endemic in chicken flocks. Reassortment events might have occurred in domestic ducks or chickens in the Pearl River Delta area in southern China. The novel H3N8 viruses possess the ability to bind to both avian-type and human-type sialic acid receptors, which pose a threat to human health. No poultry worker in our study was positive for antibodies against the H3N8 virus. The novel H3N8 virus that caused human infection had originated from chickens, a typical spillover. The virus is a triple reassortment strain with the Eurasian avian H3 gene, North American avian N8 gene, and dynamic internal genes of the H9N2 viruses. The virus already possesses binding ability to human-type receptors, though the risk of the H3N8 virus infection in humans was low, and the cases are rare and sporadic at present. Considering the pandemic potential, comprehensive surveillance of the H3N8 virus in poultry flocks and the environment is imperative, and poultry-to-human transmission should be closely monitored. National Natural Science Foundation of China, National Key Research and Development Program of China, Strategic Priority Research Program of the Chinese Academy of Sciences, Hunan Provincial Innovative Construction Special Fund: Emergency response to COVID-19 outbreak, Scientific Research Fund of Hunan Provincial Health Department, and the Hunan Provincial Health Commission Foundation.

Supporting text Virus Host Location
COVID-19 425 Influenza A Virus, H3N8 Subtype 13 Influenza A Virus, H9N2 Subtype 71 Influenza in Birds 341 Influenza, Human 286 Animals 1948 Chickens 146 Child, Preschool 37 Ducks 81 Humans 1440 Mammals 92 Phylogeny 805 Poultry 112 Retrospective Studies 18

Evidence records

6 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE6370
Key finding

An H3N8 avian influenza virus was successfully isolated from the patient's throat swab specimen collected in Hunan Province, China.

Virus
Host
Location
Not specified
Supporting text

An H3N8 virus was isolated from the patient's throat swab specimen.

Sample type
throat swab specimen
Evidence type
1 records
OVE6374
Key finding

Serological surveillance found that no poultry worker tested positive for antibodies against the H3N8 virus.

Virus
Host
Location
Not specified
Supporting text

No poultry worker in our study was positive for antibodies against the H3N8 virus.

Method
serological surveillance | antibody detection
Sample type
serum
Transmission Evidence
1 records · 1 evidence types
Evidence type
1 records
OVE6371
Key finding

The novel H3N8 virus that caused human infection originated from chickens, indicating a poultry-to-human spillover event in China.

Virus
Host
Location
Supporting text

The novel H3N8 virus that caused human infection had originated from chickens, a typical spillover.

Method
virus isolation | genome sequencing | phylogenetic analysis
Study design
descriptive virological and epidemiological investigation
Transmission direction
animal-to-human
Geographic raw
China
Country inferred
CHN
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE6373
Key finding

Novel H3N8 influenza A viruses show binding to both avian-type and human-type sialic acid receptors, indicating dual receptor usage.

Virus
Host
Location
Not specified
Supporting text

The novel H3N8 viruses possess the ability to bind to both avian-type and human-type sialic acid receptors.

Method
solid-phase binding assay | sequence alignment | homology modelling
Receptors
avian-type sialic acid receptor | human-type sialic acid receptor
Genomic Evolution
2 records · 2 evidence types
Evidence type
1 records
OVE6372
Key finding

Novel H3N8 avian influenza viruses that caused human infection originated through multiple reassortment events involving H3Ny avian influenza viruses of duck origin, a North American lineage N8 gene, and H9N2 avian influenza viruses from chickens.

Virus
Host
Not specified
Location
Not specified
Supporting text

Sequence analyses revealed the novel H3N8 AIVs originated from multiple reassortment events involving genes from H3Ny AIVs of duck origin, North American lineage N8, and H9N2 AIVs.

Event type
reassortment
Genes or segments
HA gene | NA gene | six internal gene segments
Evidence type
1 records
OVE6375
Key finding

Phylogenetic analysis of all eight gene segments showed that the novel H3N8 viruses are triple reassortants with hemagglutinin derived from Eurasian avian H3, neuraminidase from North American N8 lineage, and internal genes from G57 genotype H9N2 viruses.

Virus
Host
Location
Not specified
Supporting text

Phylogenetic analysis based on eight gene segments showed that the novel H3N8 viruses had genes derived from Eurasian avian H3, North American N8, and G57 genotype H9N2 viruses.

Genes or proteins
eight gene segments
Analysis methods
phylogenetic analysis