Longitudinal Surveillance of Influenza A Virus Exposure in Wild Boars (Sus scrofa) in Spain (2015-2023): Serologic and Virologic Evidence of Subtype Infections and H5N1 Spillover Risk.

Paloma Encinas1,2 Aitor Nogales3 Estela Escribano-Romero1 M Ángeles Martín Del Burgo1 Jorge Ramón López-Olvera4 José Enrique Granados5 Gregorio Mentaberre6 Adolfo García-Sastre7,8,9,10,11,12 Gustavo Del Real1
Affiliations 12 institutions
  1. Department of Biotechnology, National Institute of Agricultural and Food Research and Technology (INIA-CSIC), Madrid, Spain.
  2. Department of Animal Health. Faculty of Veterinary Medicine, Complutense University of Madrid, Madrid, Spain.
  3. Center for Animal Health Research, (CISA, INIA-CSIC), Madrid, Spain.
  4. Servei D'ecopatologia de Fauna Salvatge (SEFaS) and Wildlife Ecology & Health Group (WE&H), Departament de Medicina i Cirurgia Animals, Universitat Autònoma de Barcelona, Barcelona, Spain.
  5. Research Group RNM118 (Especies cinegéticas y Plagas) and Delegación Territorial de Sostenibilidad y Medio Ambiente en Granada, Granada, Spain.
  6. Wildlife Ecology & Health Group (WE&H) and Departament de Ciència Animal, Universitat de Lleida (UdL), Lleida, Spain.
  7. Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  8. Global Health and Emerging Pathogens Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  9. Department of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  10. The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  11. Department of Pathology, Molecular and Cell-Based Medicine, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
  12. The Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Abstract

Influenza A viruses (IAVs) are responsible for respiratory infections in a wide range of species, including birds, swine and humans. The role of wild boar (Sus scrofa) in IAV epidemiology remains underexplored. Here, we present a longitudinal serologic and virologic surveillance study of wild boars in Spain from 2015 to 2023. A total of 1643 nasal exudates and 2932 serum samples were analysed using quantitative RT-PCR, ELISA and haemagglutination inhibition (HI) assays to detect IAV positive samples and IAV targeted antibodies to characterise circulating viral subtypes. In addition, in the context of highly pathogenic avian influenza H5N1 outbreaks, we explored the potential transmission of avian IAV to wild boar. In summary, 6% of the serum samples tested positive and one IAV H3N1 was isolated. The seroprevalence remained stable from 2015 to 2018, undetected in 2019 and increased significantly from 2020 to 2023. The most frequently detected subtype was Eurasian avian-like H1 (clade 1C) while pandemic H1 (clade 1A) and human-like H1 (clade 1B) were less common. Human seasonal-like H3 strains from the 2000s (2000s-like H3) emerged in 2017 and have become more seroprevalent in recent years. A subset of wild boar sera from areas overlapping with H5N1 HPAI outbreaks in poultry and wild birds tested positive for recombinant H5 by ELISA, although H5N1 HI assays were negative. The monitoring of IAV in wild boar population allowed the identification of the temporal and spatial trends and shifts in the prevalence and characterisation of the infecting IAV strains. Our data suggest potential spillover events from human or other sources and support the inclusion of integrated monitoring of the wild suids as IAV reassortment-prone hosts in influenza surveillance programs.

Supporting text Virus Host Location
H5N1 82 high pathogenicity avian influenza 3 Influenza A virus (IAV) 1 swine influenza 7 wild boar 7 Influenza A virus 186 Influenza A Virus, H5N1 Subtype 300 Orthomyxoviridae Infections 228 Sus scrofa 30 Swine Diseases 153 Animals 1948 Antibodies, Viral 212 Longitudinal Studies 17 Seroepidemiologic Studies 113 Spain 25 Swine 258

Evidence records

6 total
Zoonotic Surveillance
5 records · 3 evidence types
Evidence type
1 records
OVE10532
Key finding

An infectious Influenza A virus subtype H3N1 was successfully isolated from wild boar serum samples in Spain.

Virus
Host
Location
Not specified
Supporting text

Here, we present a longitudinal serologic and virologic surveillance study of wild boars in Spain from 2015 to 2023. In summary, 6% of the serum samples tested positive and one IAV H3N1 was isolated.

Sample type
serum samples
Evidence type
3 records
OVE10533
Key finding

Influenza A virus RNA and antigen were detected in nasal exudates from wild boars in Spain by qRT-PCR and ELISA.

Virus
Host
Location
Supporting text

Here, we present a longitudinal serologic and virologic surveillance study of wild boars in Spain from 2015 to 2023. A total of 1643 nasal exudates and 2932 serum samples were analysed using quantitative RT-PCR, ELISA and haemagglutination inhibition (HI) assays to detect IAV positive samples and IAV targeted antibodies to characterise circulating viral subtypes.

Method
quantitative RT-PCR | ELISA
Sample type
nasal exudates
Geographic raw
Spain
Country inferred
ESP
OVE10534
Key finding

Recombinant H5 antigen was detected by ELISA in wild boar sera from Spanish areas overlapping with H5N1 HPAI outbreaks, although H5N1 HI assays were negative.

Virus
Host
Location
Supporting text

A subset of wild boar sera from areas overlapping with H5N1 HPAI outbreaks in poultry and wild birds tested positive for recombinant H5 by ELISA, although H5N1 HI assays were negative.

Method
ELISA | haemagglutination inhibition (HI) assay
Sample type
sera
Geographic raw
Spain
Country inferred
ESP
OVE10537
Key finding

Potential spillover of Influenza A viruses from humans or other animal sources to wild boars in Spain was inferred from surveillance data.

Virus
Host
Location
Supporting text

Here, we present a longitudinal serologic and virologic surveillance study of wild boars in Spain from 2015 to 2023. Our data suggest potential spillover events from human or other sources and support the inclusion of integrated monitoring of the wild suids as IAV reassortment-prone hosts in influenza surveillance programs.

Method
qRT-PCR | ELISA | haemagglutination inhibition (HI) assay
Geographic raw
Spain
Evidence type
1 records
OVE10531
Key finding

Serologic assays detected antibodies against Influenza A virus in wild boar serum samples in Spain from 2015 to 2023, with 6% testing positive.

Virus
Host
Location
Not specified
Supporting text

Here, we present a longitudinal serologic and virologic surveillance study of wild boars in Spain from 2015 to 2023. In summary, 6% of the serum samples tested positive and one IAV H3N1 was isolated.

Method
ELISA | haemagglutination inhibition (HI) assay
Sample type
serum
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE10535
Key finding

Serologic patterns in wild boar (Sus scrofa) revealed circulation of multiple influenza A H1 clades (1A pandemic, 1B human‑like, and 1C Eurasian avian‑like), indicating divergent lineage evolution among host‑associated strains.

Virus
Host
Location
Not specified
Supporting text

Here, we present a longitudinal serologic and virologic surveillance study of wild boars in Spain from 2015 to 2023. The most frequently detected subtype was Eurasian avian-like H1 (clade 1C) while pandemic H1 (clade 1A) and human-like H1 (clade 1B) were less common.

Analysis methods
phylogenetic clade classification | serologic subtype comparison