Literature detail

Preparedness, prevention and control related to zoonotic avian influenza.

EFSA Panel on Animal Health and Animal Welfare (AHAW) ECDC Julio Alvarez1 Anette Boklund1 Sabine Dippel1 Fernanda Dórea1 Jordi Figuerola1 Mette S Herskin1 Virginie Michel1 Miguel Ángel Miranda Chueca1 Eleonora Nannoni1 Søren Saxmose Nielsen1 Romolo Nonno1 Anja B Riber1 Jan Arend Stegeman1 Karl Ståhl1 Hans-Hermann Thulke1 Frank Tuyttens1 Christoph Winckler1 Claire Brugerolles2 Thorsten Wolff2 Anna Parys2 Erika Lindh2 Neus Latorre-Margalef2 Marie-Anne Rameix Welti2 Ralf Dürrwald2 Ramona Trebbien2 Sylvie Van der Werf2 Magnus Gisslén2 Isabella Monne3 Alice Fusaro3 Claire Guinat3 Alessio Bortolami3 Leonidas Alexakis4 Theresa Enkirch4 Olov Svartstrom4 Katriina Willgert4 Francesca Baldinelli5 Ludovica Preite5 Malin Grant5 Alessandro Broglia5 Angeliki Melidou4
Affiliations 5 institutions
  1. EFSA Panel on Animal Health and Animal Welfare members.
  2. ECDC external experts.
  3. EFSA external experts.
  4. ECDC.
  5. EFSA.
PMID 39882189 2025 EFSA J eng epublish
PubMed DOI Browse context

Article

Publication summary

A risk assessment framework was developed to evaluate the zoonotic potential of avian influenza (AI), focusing on virus mutations linked to phenotypic traits related to mammalian adaptation identified in the literature. Virus sequences were screened for the presence of these mutations and their geographical, temporal and subtype-specific trends. Spillover events to mammals (including humans) and human seroprevalence studies were also reviewed. Thirty-four mutations associated with five phenotypic traits (increased receptor specificity, haemagglutinin stability, neuraminidase specificity, enhanced polymerase activity and evasion of innate immunity) were shortlisted. AI viruses (AIVs) carrying multiple adaptive mutations and traits belonged to both low and highly pathogenic subtypes, mainly to A(H9N2), A(H7N9), A(H5N6) and A(H3N8), were sporadic and primarily detected in Asia. In the EU/EEA, H5Nx viruses of clade 2.3.4.4b, which have increased opportunities for evolution due to widespread circulation in birds and occasional cases/outbreaks in mammals, have acquired the highest number of zoonotic traits. Adaptive traits, such as enhanced polymerase activity and immune evasion, were frequently acquired, while receptor-specific mutations remained rare. Globally, human cases remain rare, with the majority overall due to A(H5N1), A(H5N6), A(H7N9) and A(H9N2) that are among the subtypes that tend to have a higher number of adaptive traits. The main drivers of mammalian adaptation include virus and host characteristics, and external factors increasing AIV exposure of mammals and humans to wild and domestic birds (e.g. human activities and ecological factors). Comprehensive surveillance of AIVs targeting adaptive mutations with whole genome sequencing in animals and humans is essential for early detection of zoonotic AIVs and efficient implementation of control measures. All preparedness, preventive and control measures must be implemented under a One Health framework and tailored to the setting and the epidemiological situation; in particular, enhanced monitoring, biosecurity, genomic surveillance and global collaboration are critical for mitigating the zoonotic risks of AIV.

avian influenza birds highly pathogenic avian influenza (HPAI) mammals mutations preparedness public health

Structured evidence records

Evidence records

6 total
2 records
Extraction confidence 0.70
Key finding

Sequence screening identified adaptive mutations in several avian influenza subtypes, revealing genetic traits linked to mammalian adaptation.

Virus
Host
Location
Not specified
Supporting text

Virus sequences were screened for the presence of these mutations and their geographical, temporal and subtype-specific trends. Thirty-four mutations associated with five phenotypic traits (increased receptor specificity, haemagglutinin stability, neuraminidase specificity, enhanced polymerase activity and evasion of innate immunity) were shortlisted. AI viruses (AIVs) carrying multiple adaptive mutations and traits belonged to both low and highly pathogenic subtypes, mainly to A(H9N2), A(H7N9), A(H5N6) and A(H3N8).

Genes or proteins
haemagglutinin; neuraminidase; polymerase
Analysis methods
sequence screening; comparative genomic analysis
Extraction confidence 0.70
Key finding

H5Nx viruses of clade 2.3.4.4b have accumulated the greatest number of adaptive genomic changes enhancing zoonotic potential.

Virus
Host
Location
Not specified
Supporting text

In the EU/EEA, H5Nx viruses of clade 2.3.4.4b, which have increased opportunities for evolution due to widespread circulation in birds and occasional cases/outbreaks in mammals, have acquired the highest number of zoonotic traits.

Analysis methods
evolutionary analysis
1 records
Extraction confidence 0.95
Key finding

Avian influenza viruses of subtypes A(H9N2), A(H7N9), A(H5N6), and A(H3N8) were found to carry multiple adaptive mutations associated with mammalian adaptation traits such as enhanced polymerase activity, immune evasion, and altered receptor and neuraminidase specificity.

Virus
Host
Not specified
Location
Not specified
Supporting text

Thirty-four mutations associated with five phenotypic traits (increased receptor specificity, haemagglutinin stability, neuraminidase specificity, enhanced polymerase activity and evasion of innate immunity) were shortlisted. AI viruses (AIVs) carrying multiple adaptive mutations and traits belonged to both low and highly pathogenic subtypes, mainly to A(H9N2), A(H7N9), A(H5N6) and A(H3N8).

Genes or proteins
haemagglutinin; neuraminidase; polymerase
Mechanism types
receptor_binding; polymerase_activity; immune_escape
1 records
Extraction confidence 0.65
Key finding

Avian influenza viruses occasionally exhibit mutations linked to increased receptor specificity, though such receptor-specific mutations were rare among those analyzed.

Virus
Host
Location
Not specified
Supporting text

Thirty-four mutations associated with five phenotypic traits (increased receptor specificity, haemagglutinin stability, neuraminidase specificity, enhanced polymerase activity and evasion of innate immunity) were shortlisted. ... receptor-specific mutations remained rare.

Method
viral sequence screening; literature review
Receptors
receptor specificity
1 records
Extraction confidence 0.80
Key finding

Human seroprevalence studies of avian influenza viruses were reviewed to assess zoonotic potential.

Virus
Location
Not specified
Supporting text

Spillover events to mammals (including humans) and human seroprevalence studies were also reviewed.

Sample type
serum
1 records
Extraction confidence 0.85
Key finding

The study advocates genomic surveillance of avian influenza viruses in animals and humans to detect adaptive mutations linked to zoonotic potential.

Virus
Host
Location
Not specified
Supporting text

Comprehensive surveillance of AIVs targeting adaptive mutations with whole genome sequencing in animals and humans is essential for early detection of zoonotic AIVs and efficient implementation of control measures.

Method
whole genome sequencing; genomic surveillance