PA-X I94V mutation modulates the pathogenicity of the highly pathogenic H7N9 influenza A virus in mice and chickens.

Xia Chen1,2,3 Haozhan Liu4 Liyi Jiang1,2,3 Xingping Hong1,2,3 Ming Kong1,2,3 Xiyue Wang1,2,3 Zenglei Hu1,5 Min Gu1,2,3 Xiaoquan Wang1,2,3 Shunlin Hu1,2,3 Xiaowen Liu1,2,3 Liping Yan6 Gang Chen7 Daxin Peng1,2,3 Xiufan Liu1,2,8 Jiao Hu1,2,9
Affiliations 9 institutions
  1. Key Laboratory of Avian Bioproducts Development,Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, Yangzhou University, China
  2. Jiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonosis, College of Veterinary Medicine, Yangzhou University, Yangzhou, Jiangsu, China
  3. Key Laboratory of Prevention and Control of Biological Hazard Factors (Animal Origin) for Agri-food Safety and Quality, Ministry of Agriculture of China (26116120), College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
  4. College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.
  5. Joint International Research Laboratory of Agriculture and Agri-Product Safety, Ministry of Education of China, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
  6. MOE Joint International Research Laboratory of Animal Health and Food Safety, Jiangsu Detection Center of Terrestrial Wildlife Disease, Institute of Immunology and College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.
  7. School of Rehabilitation Sciences and Engineering, University of Health and Rehabilitation Sciences, Qingdao 266024, China.
  8. Key Laboratory of Prevention and Control of Biological Hazard Factors (Animal Origin) for Agri-food Safety and Quality, Ministry of Agriculture of China (26116120), College of Veterinary Medicine, Yangzhou University, Yangzhou, China. Electronic address: [email protected].
  9. Key Laboratory of Prevention and Control of Biological Hazard Factors (Animal Origin) for Agri-food Safety and Quality, Ministry of Agriculture of China (26116120), College of Veterinary Medicine, Yangzhou University, Yangzhou, China. Electronic address: [email protected].

Abstract

Currently, the continuous evolution of influenza A virus (IAV) still presents a major threat to human and animal health. Our sequence analysis reveals high variation at site 94 of the PA/PA-X gene in recent H5N1 and H7N9 IAV strains. To be noted, I94V mutation has become prevalent in recent human H7N9 viruses. However, the specific role of PA I94V mutation in regulating viral pathogenicity of H7N9 virus both in mammals and avian species is currently unknown. We first demonstrated that PA/PA-X I94V mutation increases the pathogenicity and viral fitness in mice while attenuating viral virulence in chickens. To determine the contribution of PA-I94V and PA-X-I94V in regulating the host adaptation of the H7N9 virus, we then systematically compared the phenotypes of the PA-X-deficient virus and the PA-X-deficient virus with PA I94V mutation. Notably, when deleted PA-X expression, the PA I94V mutation has no obvious effect on viral fitness in mice and chickens, suggesting the direct role of PA-X I94V in modulating viral virulence of H7N9 virus. Mechanistically, PA-X I94V mutation significantly increases viral polymerase activity and viral replication in mammalian cells. In addition, PA-X I94V mutation also modulates the host shutoff activity of PA-X and exerts an obvious role in inhibiting antiviral and cell death-related response. Collectively, our study advances our understanding of how the adaptive site in PA-X regulates host response and viral fitness in mice and chickens, offering deeper insights into the complex pathogenesis of influenza A virus.

Supporting text Virus Host Location
Avian influenza virus 59 Chickens 146 H7N9 subtype 2 Host adaptation 20 Host shutoff 1 Mice 254 PA-X 2 Influenza A Virus, H7N9 Subtype 87 Influenza in Birds 341 Orthomyxoviridae Infections 228 RNA-Dependent RNA Polymerase 49 Viral Nonstructural Proteins 28 Animals 1948 Chickens 146 Dogs 176 Humans 1440 Madin Darby Canine Kidney Cells 36 Mice 253 Mice, Inbred BALB C 73 Mutation 209 Repressor Proteins 2 Virulence 108 Virus Replication 191 PA-X protein, influenza A virus 2

Evidence records

6 total
Experimental Infection
3 records · 1 evidence types
Evidence type
3 records
OVE11931
Key finding

The PA/PA-X I94V mutation increases pathogenicity and viral fitness of H7N9 influenza A virus in mice.

Virus
Host
Location
Not specified
Supporting text

We first demonstrated that PA/PA-X I94V mutation increases the pathogenicity and viral fitness in mice

Method
in vivo pathogenicity assessment in mice | viral fitness evaluation in mice
Experimental system
animal model (mice) experimentally infected with H7N9 virus mutants
OVE11932
Key finding

The PA/PA-X I94V mutation attenuates virulence of H7N9 influenza A virus in chickens.

Virus
Host
Location
Not specified
Supporting text

while attenuating viral virulence in chickens.

Method
in vivo virulence assessment in chickens
Experimental system
animal model (chickens) experimentally infected with H7N9 virus mutants
OVE11933
Key finding

In PA-X–deficient H7N9 virus, adding the PA I94V mutation has no obvious effect on viral fitness in mice and chickens, implicating PA-X I94V in virulence modulation.

Virus
Host
Location
Not specified
Supporting text

Notably, when deleted PA-X expression, the PA I94V mutation has no obvious effect on viral fitness in mice and chickens, suggesting the direct role of PA-X I94V in modulating viral virulence of H7N9 virus.

Method
in vivo viral fitness comparison in PA-X–deficient background
Experimental system
animal models (mice and chickens) using PA-X–deficient H7N9 with or without PA I94V mutation
Functional Mechanism
2 records · 1 evidence types
Evidence type
2 records
OVE11934
Key finding

In H7N9 virus, the PA-X I94V mutation enhances viral polymerase activity and replication in mammalian cells.

Virus
Host
Not specified
Location
Not specified
Supporting text

Mechanistically, PA-X I94V mutation significantly increases viral polymerase activity and viral replication in mammalian cells.

Genes or proteins
PA-X
Mutations
I94V
Mechanism types
replication adaptation
OVE11935
Key finding

The PA-X I94V mutation in H7N9 modulates PA-X–mediated host shutoff, inhibiting antiviral and cell death–related responses.

Virus
Host
Not specified
Location
Not specified
Supporting text

In addition, PA-X I94V mutation also modulates the host shutoff activity of PA-X and exerts an obvious role in inhibiting antiviral and cell death-related response.

Genes or proteins
PA-X
Host factors
antiviral response | cell death-related response
Mutations
I94V
Mechanism types
immune escape | virulence adaptation
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE11936
Key finding

Recent sequence analysis shows high variation at PA/PA-X site 94 in H5N1 and H7N9, with the PA-X I94V mutation becoming prevalent in recent human H7N9 viruses.

Virus
Host
Location
Not specified
Supporting text

Our sequence analysis reveals high variation at site 94 of the PA/PA-X gene in recent H5N1 and H7N9 IAV strains. To be noted, I94V mutation has become prevalent in recent human H7N9 viruses.

Genes or proteins
PA/PA-X gene | PA-X
Analysis methods
sequence analysis