Marked Antigenic Divergence and Evolutionary Analysis of H5 AIVs from Wild Birds in East China, 2013-2022.

Xiang Su1 Keyu Cai1 Yuhan Zong1 Yunfei Guo1 Yuncong Yin1,2,3 Xian Zheng1 Xinyu Miao1,2,3 Hui Yang1,2,3 Tao Qin1,2,3 Daxin Peng1,2,3 Sujuan Chen1,2,3
Affiliations 3 institutions
  1. College of Veterinary Medicine, Yangzhou University, Yangzhou 225000, China.
  2. Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou 225009, China.
  3. Jiangsu Research Centre of Engineering and Technology for Prevention and Control of Poultry Disease, Yangzhou 225009, China.

Abstract

The highly pathogenic H5 subtype avian influenza viruses (AIVs) pose persistent threats to the poultry industry and public health owing to their high lethality and pandemic potential. Migratory wild birds play a pivotal role in the global dissemination and genetic reassortment of the virus, serving as both natural reservoirs and long-distance vectors that drive its spatiotemporal spread. However, the extent and evolutionary drivers of antigenic divergence among H5 AIVs circulating in wild birds in East China remain poorly understood. Here, we aim to characterize the evolutionary dynamics and antigenic divergence of H5 AIVs isolated from wild birds in East China between 2013 and 2022. Whole-genome sequencing and phylogenetic analysis revealed that the isolates belonged to multiple clades, including 2.3.2.1 and 2.3.4.4, and encompassed the H5N1, H5N6, and H5N8 subtypes. Key amino acid site analysis showed that the glycosylation site patterns in the HA and NA proteins varied among clades, with some strains exhibiting gains or losses of glycosylation sites, while certain strains had acquired mutations associated with mammalian adaptation. Cross-hemagglutination inhibition (HI) assays combined with antigenic cartography demonstrated that the majority of the isolates were antigenically well-matched with the contemporaneous vaccine strains used in China, indicating that these vaccines effectively covered the predominant circulating antigenic variants at the time. Nevertheless, potential antigenic mismatches were still observed between some circulating strains and these vaccine strains. These findings suggest that wild birds in East China may contribute to the regional movement and diversification of H5 AIVs, highlighting the value of sustained surveillance for early warning and vaccine strain evaluation.

Supporting text Virus Host Location
antigenic difference 1 avian influenza virus 59 genetic evolution 12 H5 subtype 2 wild birds 18

Evidence records

4 total
Zoonotic Surveillance
2 records · 2 evidence types
Evidence type
1 records
OVE11685
Key finding

H5 avian influenza viruses (including H5N1, H5N6, and H5N8) were isolated from wild birds in East China during 2013–2022.

Virus
Host
Location
Not specified
Supporting text

we aim to characterize the evolutionary dynamics and antigenic divergence of H5 AIVs isolated from wild birds in East China between 2013 and 2022. Whole-genome sequencing and phylogenetic analysis revealed that the isolates belonged to multiple clades ... and encompassed the H5N1, H5N6, and H5N8 subtypes.

Evidence type
1 records
OVE11688
Key finding

Wild birds in East China may contribute to the regional movement and diversification of H5 AIVs.

Virus
Host
Location
Supporting text

These findings suggest that wild birds in East China may contribute to the regional movement and diversification of H5 AIVs,

Method
whole-genome sequencing | phylogenetic analysis | cross-hemagglutination inhibition (HI) assays | antigenic cartography
Geographic raw
East China
Country inferred
CHN
Functional Mechanism
1 records · 1 evidence types
Evidence type
1 records
OVE11687
Key finding

Some H5 AIV strains from wild birds in East China carried mutations associated with mammalian adaptation, alongside clade-specific gains or losses of HA and NA glycosylation sites.

Virus
Host
Not specified
Location
Not specified
Supporting text

Key amino acid site analysis showed that the glycosylation site patterns in the HA and NA proteins varied among clades, with some strains exhibiting gains or losses of glycosylation sites, while certain strains had acquired mutations associated with mammalian adaptation.

Genes or proteins
HA | NA
Mechanism types
host-range expansion
Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE11686
Key finding

Whole-genome phylogenetics assigned wild-bird H5 AIV isolates from East China to clades 2.3.2.1 and 2.3.4.4 across subtypes H5N1, H5N6, and H5N8.

Virus
Host
Location
Not specified
Supporting text

Here, we aim to characterize the evolutionary dynamics and antigenic divergence of H5 AIVs isolated from wild birds in East China between 2013 and 2022. Whole-genome sequencing and phylogenetic analysis revealed that the isolates belonged to multiple clades, including 2.3.2.1 and 2.3.4.4, and encompassed the H5N1, H5N6, and H5N8 subtypes.

Genes or proteins
whole-genome
Analysis methods
whole-genome sequencing | phylogenetic analysis