Novel Reassortant H9N2 Avian Influenza Viruses with Dual Receptor-Binding Capacity and Evidence of Direct Mammalian Infectivity Circulating in Northeast China Live Poultry Markets.

Yongning Ren1 Hongjin Li1 Weiwen Yan1 Xinxin Liu1,2 Weiwei Chi1 Rui Luo1 Tobias Stoeger3 Abdul Wajid4 Aleksandar Dodovski5 Chao Gao1 Guang Wang1 Maria Inge Lusida6,7 Claro N Mingala8 Dmitry B Andreychuk9 Renfu Yin1
Affiliations 9 institutions
  1. State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory of Zoonosis Research, Department of Preventive Veterinary Medicine, College of Veterinary Medicine, Jilin University, Ministry of Education, Changchun 130062, China.
  2. College of Food Science and Engineering, Jilin University, Changchun 130062, China.
  3. Institute of Lung Health and Immunity (LHI), Comprehensive Pneumology Center (CPC), Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), 85764 Munich, Germany.
  4. Department of Biotechnology, Balochistan University of Information Technology, Engineering and Management Sciences, Quetta 87300, Pakistan.
  5. Department for Avian Diseases, Faculty of Veterinary Medicine, Ss. Cyril and Methodius University in Skopje, Lazar Pop Trajkov 5-7, 1000 Skopje, North Macedonia.
  6. Faculty of Medicine, Universitas Airlangga, Surabaya 60115, Indonesia.
  7. Research Center on Global Emerging and Re-Emerging Infectious Diseases, Institute of Tropical Disease, Universitas Airlangga, Surabaya 60115, Indonesia.
  8. Livestock Biotechnology Center, Philippine Carabao Center, Science City of Muñoz, Nueva Ecija 3120, Philippines.
  9. Reference Laboratory for Avian Viral Diseases, FGBI "Federal Centre for Animal Health" (FGBI "ARRIAH"), Vladimir 600901, Russia.

Abstract

H9N2 low-pathogenic avian influenza viruses (LPAIV) represent an ongoing zoonotic threat due to their enzootic circulation in poultry, reassortment capacity, and increasing human transmission events. This study characterized three H9N2 isolates recovered from apparently healthy poultry in a Changchun live poultry market (September-November 2022) that exhibited unprecedented genetic and phenotypic characteristics indicating enhanced zoonotic risk. Phylogenetic analysis showed a complex mosaic genome combining segments from four distinct lineages: HA from the BJ/94-like lineage (human-associated), PB1/NP/NS from the F98-like lineage, NA from the FJ/30-C-like branch, and PB2/M genes from the G1-like lineage. Bayesian molecular clock analysis estimated the most recent common ancestor at February 2022, with HL55 and HL56 diverging by May 2022, indicating rapid local viral evolution. All isolates retained hallmark LPAIV characteristics (monobasic HA cleavage site, zero intravenous pathogenicity index in chickens). However, receptor-binding assays demonstrated a critical divergence among the isolates: while HL45 exhibited exclusive avian α2-3 receptor preference, both HL55 and HL56 retained strong avian receptor binding while additionally showing measurable affinity for human α2-6 receptors-a dual-binding phenotype associated with enhanced zoonotic potential. Most significantly, the HL55 isolate successfully infected BALB/c mice without prior adaptation, causing transient upper respiratory tract replication, moderate weight loss (~9.2%), and mild disease without mortality or systemic dissemination. These findings demonstrate that the direct mammalian infectivity of this specific mosaic H9N2 lineage adds to the growing body of evidence regarding the zoonotic potential of contemporary H9N2 variants. The presence of known mammalian-adaptation markers (PB2 A588V, NA stalk deletion, HA position 226 leucine), combined with demonstrated dual receptor-binding capacity and inherent mammalian infectivity, underscores the accelerated evolutionary trajectory of H9N2 viruses toward increased zoonotic competence. These findings warrant intensified surveillance in live poultry markets, comprehensive antigenic characterization of emerging variants, and enhanced biosecurity measures to mitigate the risk of spillover events and potential pandemic emergence.

Supporting text Virus Host Location
avian influenza virus 59 biological characteristics 2 genetic evolutionary analysis 2 H9N2 subtype AIV 1

Evidence records

7 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE11859
Key finding

Three H9N2 avian influenza virus isolates were recovered from apparently healthy poultry in a Changchun live poultry market in 2022.

Virus
Host
Natural host Context pending
Location
Not specified
Supporting text

This study characterized three H9N2 isolates recovered from apparently healthy poultry in a Changchun live poultry market (September-November 2022)

Experimental Infection
2 records · 2 evidence types
Evidence type
1 records
OVE11864
Key finding

The H9N2 isolate HL55 infected BALB/c mice without prior adaptation, causing transient upper respiratory tract replication, ~9.2% weight loss, mild disease, and no mortality or systemic dissemination.

Virus
Host
Location
Not specified
Supporting text

the HL55 isolate successfully infected BALB/c mice without prior adaptation, causing transient upper respiratory tract replication, moderate weight loss (~9.2%), and mild disease without mortality or systemic dissemination.

Method
mouse infection challenge | body weight monitoring | clinical disease observation | assessment of tissue dissemination/replication sites
Experimental system
mouse model (BALB/c mice)
Evidence type
1 records
OVE11863
Key finding

H9N2 isolate HL55 directly infected BALB/c mice without prior adaptation, with transient upper respiratory tract replication and mild disease.

Virus
Host
Location
Not specified
Supporting text

the HL55 isolate successfully infected BALB/c mice without prior adaptation, causing transient upper respiratory tract replication, moderate weight loss (~9.2%), and mild disease without mortality or systemic dissemination.

Method
experimental infection | viral replication assessment in upper respiratory tract | clinical observation (weight loss, disease severity)
Sample type
upper respiratory tract
Experimental system
animal challenge model (mouse infection)
Functional Mechanism
2 records · 2 evidence types
Evidence type
1 records
OVE11862
Key finding

H9N2 isolates HL55 and HL56 bind both avian α2-3 and human α2-6 sialic acid receptors, whereas HL45 binds only avian α2-3.

Virus
Host
Not specified
Location
Not specified
Supporting text

receptor-binding assays demonstrated a critical divergence among the isolates: while HL45 exhibited exclusive avian α2-3 receptor preference, both HL55 and HL56 retained strong avian receptor binding while additionally showing measurable affinity for human α2-6 receptors

Method
receptor-binding assays
Receptors
avian α2-3 | human α2-6
Evidence type
1 records
OVE11865
Key finding

H9N2 isolates carry mammalian-adaptation markers PB2 A588V, NA stalk deletion, and HA position 226 leucine, features linked to enhanced zoonotic adaptation including receptor binding and mammalian infectivity.

Virus
Host
Not specified
Location
Not specified
Supporting text

The presence of known mammalian-adaptation markers (PB2 A588V, NA stalk deletion, HA position 226 leucine), combined with demonstrated dual receptor-binding capacity and inherent mammalian infectivity, underscores the accelerated evolutionary trajectory of H9N2 viruses toward increased zoonotic competence.

Genes or proteins
PB2 | NA | HA
Receptors
human α2-6 receptors | avian α2-3 receptors
Mutations
PB2 A588V | NA stalk deletion | HA position 226 leucine
Mechanism types
receptor binding | host-range expansion | host entry | transmission fitness | virulence adaptation
Genomic Evolution
2 records · 2 evidence types
Evidence type
1 records
OVE11860
Key finding

H9N2 isolates possess a reassortant mosaic genome with HA from BJ/94-like, PB1/NP/NS from F98-like, NA from FJ/30-C-like, and PB2/M from G1-like lineages.

Virus
Host
Not specified
Location
Not specified
Supporting text

Phylogenetic analysis showed a complex mosaic genome combining segments from four distinct lineages: HA from the BJ/94-like lineage, PB1/NP/NS from the F98-like lineage, NA from the FJ/30-C-like branch, and PB2/M genes from the G1-like lineage.

Event type
reassortment
Genes or segments
HA (BJ/94-like) | PB1 (F98-like) | NP (F98-like) | NS (F98-like) | NA (FJ/30-C-like branch) | PB2 (G1-like) | M (G1-like)
Evidence type
1 records
OVE11861
Key finding

Bayesian molecular clock analysis dated the H9N2 isolates’ MRCA to February 2022, with HL55 and HL56 diverging by May 2022, indicating rapid local evolution.

Virus
Host
Not specified
Location
Not specified
Supporting text

Bayesian molecular clock analysis estimated the most recent common ancestor at February 2022, with HL55 and HL56 diverging by May 2022, indicating rapid local viral evolution.

Genes or proteins
genome segments
Analysis methods
Bayesian molecular clock analysis | phylogenetic analysis