Antigenic and genetic characterization of H9N2 swine influenza viruses in China.

Yan L Cong1 Juan Pu1 Qin F Liu1 Shuai Wang1 Guo Z Zhang1 Xing L Zhang1 Wei X Fan2 Earl G Brown3 Jin H Liu1
Affiliations 3 institutions
  1. Laboratory of Infectious Diseases, College of Veterinary Medicine, State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing 100094, PR China.
  2. China Animal Health and Epidemiology Center, Qingdao 266032, PR China.
  3. Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, ON, Canada.

Abstract

As pigs are susceptible to infection with both avian and human influenza A viruses, they have been proposed to be an intermediate host for the generation of pandemic virus through reassortment. Antigenic and genetic characterization was performed for five swine H9N2 influenza viruses isolated from diseased pigs from different farms. The haemagglutinin (HA) antigenicity of swine H9N2 viruses was different from that of chicken H9N2 viruses prevalent in northern China. Genetic analysis revealed that all five isolates had an RLSR motif at the cleavage site of HA, which was different from those of A/duck/Hong Kong/Y280/97 (Dk/HK/Y280/97)-like viruses established in chickens in China. Phylogenetic analyses indicated that the five swine H9N2 viruses formed novel HA and neuraminidase sublineages that were related closely to those of earlier chicken H9 viruses and were also consistent with the extent of the observed antigenic variation. The six internal genes of the isolates possessed H5N1-like sequences, indicating that they were reassortants of H9 and H5 viruses. The present results indicate that avian to porcine interspecies transmission of H9N2 viruses might have resulted in the generation of viruses with novel antigenic and genetic characteristics; therefore, surveillance of swine influenza should be given a high priority.

Supporting text Virus Host Location
Amino Acid Sequence 128 Animals 1948 Antigens, Viral 49 Chickens 146 China 229 Hemagglutinin Glycoproteins, Influenza Virus 180 Humans 1440 Influenza A Virus, H9N2 Subtype 71 Influenza in Birds 341 Influenza, Human 286 Molecular Sequence Data 160 Orthomyxoviridae Infections 228 Phylogeny 805 Reassortant Viruses 103 Sequence Homology, Amino Acid 18 Sus scrofa 30 Swine 258 Swine Diseases 153 Zoonoses 397

Evidence records

4 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE436
Key finding

Five H9N2 influenza viruses were successfully isolated from diseased pigs from different farms in China.

Virus
Host
Location
Not specified
Supporting text

Antigenic and genetic characterization was performed for five swine H9N2 influenza viruses isolated from diseased pigs from different farms.

Genomic Evolution
3 records · 2 evidence types
Evidence type
1 records
OVE438
Key finding

Swine H9N2 influenza viruses in China were reassortants containing six internal genes derived from H5N1 influenza viruses.

Virus
Host
Not specified
Location
Not specified
Supporting text

The six internal genes of the isolates possessed H5N1-like sequences, indicating that they were reassortants of H9 and H5 viruses.

Event type
reassortment
Genes or segments
six internal genes
Evidence type
2 records
OVE437
Key finding

Phylogenetic analysis showed that swine H9N2 influenza viruses formed novel HA and neuraminidase sublineages closely related to earlier chicken H9 viruses.

Virus
Host
Location
Not specified
Supporting text

Phylogenetic analyses indicated that the five swine H9N2 viruses formed novel HA and neuraminidase sublineages that were related closely to those of earlier chicken H9 viruses and were also consistent with the extent of the observed antigenic variation.

Genes or proteins
HA | neuraminidase
Analysis methods
phylogenetic analysis
OVE439
Key finding

Avian to porcine interspecies transmission of H9N2 influenza viruses occurred, producing novel swine H9N2 strains.

Virus
Host
Location
Not specified
Supporting text

The present results indicate that avian to porcine interspecies transmission of H9N2 viruses might have resulted in the generation of viruses with novel antigenic and genetic characteristics.

Analysis methods
antigenic analysis | genetic analysis | phylogenetic analysis