Broad receptor engagement of an emerging global coronavirus may potentiate its diverse cross-species transmissibility.

Wentao Li1 Ruben J G Hulswit1 Scott P Kenney2 Ivy Widjaja1 Kwonil Jung2 Moyasar A Alhamo2 Brenda van Dieren1 Frank J M van Kuppeveld1 Linda J Saif3 Berend-Jan Bosch4,5
Affiliations 5 institutions
  1. Virology Division, Department of Infectious Diseases & Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands.
  2. Department of Veterinary Preventive Medicine, Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691.
  3. Department of Veterinary Preventive Medicine, Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Wooster, OH 44691 [email protected] [email protected].
  4. Virology Division, Department of Infectious Diseases & Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands
  5. [email protected] [email protected].

Abstract

Porcine deltacoronavirus (PDCoV), identified in 2012, is a common enteropathogen of swine with worldwide distribution. The source and evolutionary history of this virus is, however, unknown. PDCoV belongs to the Deltacoronavirus genus that comprises predominantly avian CoV. Phylogenetic analysis suggests that PDCoV originated relatively recently from a host-switching event between birds and mammals. Insight into receptor engagement by PDCoV may shed light into such an exceptional phenomenon. Here we report that PDCoV employs host aminopeptidase N (APN) as an entry receptor and interacts with APN via domain B of its spike (S) protein. Infection of porcine cells with PDCoV was drastically reduced by APN knockout and rescued after reconstitution of APN expression. In addition, we observed that PDCoV efficiently infects cells of unusual broad species range, including human and chicken. Accordingly, PDCoV S was found to target the phylogenetically conserved catalytic domain of APN. Moreover, transient expression of porcine, feline, human, and chicken APN renders cells susceptible to PDCoV infection. Binding of PDCoV to an interspecies conserved site on APN may facilitate direct transmission of PDCoV to nonreservoir species, including humans, potentially reflecting the mechanism that enabled a virus, ancestral to PDCoV, to breach the species barrier between birds and mammals. The APN cell surface protein is also used by several members of the Alphacoronavirus genus. Hence, our data constitute the second identification of CoVs from different genera that use the same receptor, implying that CoV receptor selection is subjected to specific restrictions that are still poorly understood.

Supporting text Virus Host Location
APN 1 cross-species transmission 75 PDCoV 5 receptor 18 spike 25 Communicable Diseases, Emerging 33 Coronavirus Infections 171 Animals 1948 Antibodies, Viral 212 Cats 120 CD13 Antigens 7 Cell Line 158 Chickens 146 Chlorocebus aethiops 70 Coronavirus 92 Dogs 176 Host Specificity 132 Host-Pathogen Interactions 55 Humans 1440 Madin Darby Canine Kidney Cells 36 Mice 253 Spike Glycoprotein, Coronavirus 274 Swine 258 Vero Cells 55

Evidence records

4 total
Functional Mechanism
2 records · 1 evidence types
Evidence type
2 records
OVE2978
Key finding

Porcine deltacoronavirus uses host aminopeptidase N (APN) as its entry receptor through interaction with the spike protein domain B.

Virus
Host
Location
Not specified
Supporting text

Here we report that PDCoV employs host aminopeptidase N (APN) as an entry receptor and interacts with APN via domain B of its spike (S) protein.

Method
receptor binding assay | APN knockout and reconstitution | cell infection assay
Receptors
aminopeptidase N | APN
Host factors
spike protein domain B
OVE2979
Key finding

Expression of porcine, feline, human, or chicken aminopeptidase N (APN) enables cells to be infected by porcine deltacoronavirus, demonstrating cross-species receptor compatibility.

Virus
Host
Location
Not specified
Supporting text

Moreover, transient expression of porcine, feline, human, and chicken APN renders cells susceptible to PDCoV infection.

Method
transient expression assay | cell infection assay
Receptors
aminopeptidase N | APN
Genomic Evolution
2 records · 1 evidence types
Evidence type
2 records
OVE2983
Key finding

Phylogenetic analysis indicates that Porcine deltacoronavirus originated relatively recently from a host‑switching event between avian and mammalian hosts within the Deltacoronavirus genus.

Virus
Host
Location
Not specified
Supporting text

PDCoV belongs to the Deltacoronavirus genus that comprises predominantly avian CoV. Phylogenetic analysis suggests that PDCoV originated relatively recently from a host‑switching event between birds and mammals.

Analysis methods
phylogenetic analysis
OVE2982
Key finding

Phylogenetic analysis indicates that Porcine deltacoronavirus originated from a host-switching transmission event between birds and mammals.

Virus
Host
Location
Not specified
Supporting text

Phylogenetic analysis suggests that PDCoV originated relatively recently from a host-switching event between birds and mammals.

Analysis methods
phylogenetic analysis