|
-
|
2022. Pandemic or panzootic: A reflection on terminology for SARS-CoV-2 infection. Emerging Infectious Diseases 28: 2552–2555 |
Agnelli |
2022 |
|
PMID 35636310
|
2022 |
Amato |
2022 |
|
PMID 34204885
|
2021 |
Audino |
2021 |
|
PMID 33605423
In OmniVira
|
Susceptibility and Attenuated Transmissibility of SARS-CoV-2 in Domestic Cats. |
Bao |
2021 |
|
PMID 32938527
|
2020. SARS-CoV-2 in quarantined domestic cats from COVID-19 households or close contacts, Hong Kong, China. Emerging Infectious Diseases 26: 3071–3074 |
Barrs |
2020 |
|
PMID 33716040
In OmniVira
|
The SARS-CoV-2 Y453F mink variant displays a pronounced increase in ACE-2 affinity but does not challenge antibody neutralization. |
Bayarri-Olmos |
2021 |
|
-
|
2021 |
BBC News |
2021 |
|
PMID 35036970
|
2022 |
Becker |
2022 |
|
PMID 17785537
|
2007. The evolution of genome compression and genomic novelty in RNA viruses. Genome Research 171496–1504 |
Belshaw |
2007 |
|
PMID 32946664
|
2021. SARS-CoV-2 infection of Chinese hamsters ( Cricetulus griseus ) reproduces COVID-19 pneumonia in a well-established small animal model. Transboundary and Emerging Diseases 68: 1075–1079 |
Bertzbach |
2021 |
|
PMID 33171111
|
2021 |
Blair |
2021 |
|
PMID 33445704
|
2021 |
Boklund |
2020 |
|
PMID 16504105
|
2006. SIMMAP: Stochastic character mapping of discrete traits on phylogenies. BMC Bioinformatics 7: 88 |
Bollback |
2006 |
|
PMID 32994343
In OmniVira
|
Experimental infection of domestic dogs and cats with SARS-CoV-2: Pathogenesis, transmission, and response to reexposure in cats. |
Bosco-Lauth |
2020 |
|
PMID 34286685
|
2021 |
Bosco-Lauth |
2080 |
|
PMID 34452371
|
2021. Intravenous, intratracheal, and intranasal inoculation of swine with SARS-CoV-2 |
Buckley |
2021 |
|
PMID 35016195
|
2022 |
Cameroni |
2022 |
|
-
|
2020 |
Carroll |
2020 |
|
-
|
2023 |
[CDC] Center for Disease Control and Pre |
2019 |
|
PMID 37389252
|
The ACE2 receptor accelerates but is not biochemically required for SARS-CoV-2 membrane fusion. Chemical Science 146997–7004 |
Cervantes |
2023 |
|
PMID 34492088
|
2021 |
Chaintoutis |
2021 |
|
PMID 32215622
|
2020 |
Chan |
2019 |
|
PMID 34732584
In OmniVira
|
SARS-CoV-2 exposure in wild white-tailed deer (<i>Odocoileus virginianus</i>). |
Chandler |
2021 |
|
PMID 32434946
|
2020 |
Chandrashekar |
2020 |
|
PMID 34842046
|
2021 |
Cool |
2021 |
|
PMID 32123347
|
2020 |
Coronaviridae Study Group of the Interna |
2019 |
|
PMID 32811514
|
2020. Intranasal exposure of African green monkeys to SARS-CoV-2 results in acute phase pneumonia with shedding and lung injury still present in the early convalescence phase. Virology Journal 17: 125 |
Cross |
2020 |
|
-
|
2021 |
[CRS] Congressional Research Service |
2021 |
|
PMID 30531947
|
2019. Origin and evolution of pathogenic coronaviruses |
Cui |
2019 |
|
PMID 32826334
In OmniVira
|
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. |
Damas |
2020 |
|
PMID 32402329
|
2020. Novel human coronavirus (SARS-CoV-2): A lesson from animal coronaviruses. Veterinary Microbiology 244: 108693 |
Decaro |
2020 |
|
PMID 37232308
|
2023. Wildlife health surveillance: Gaps, needs and opportunities. Scientific and Technical Review 41: 1–27 |
Delgado |
2023 |
|
-
|
2020. Masking strategies for SARS-CoV-2 alignments. Virological.org (May 2020) |
De Maio |
2020 |
|
PMID 32616673
|
2020 |
Deng |
2020 |
|
PMID 33327566
|
2020. Genomic epidemiology of the first wave of SARS-CoV-2 in Italy |
Di Giallonardo |
2020 |
|
PMID 32854108
|
2020. A mouse-adapted model of SARS-CoV-2 to test COVID-19 countermeasures |
Dinnon |
2020 |
|
PMID 35043101
|
2022. The mysterious origins of the Omicron variant of SARS-CoV-2. Innovation 3: 100206 |
Du |
2022 |
|
PMID 34767598
|
2021. An outbreak of SARS-CoV-2 with high mortality in mink ( Neovison vison ) on multiple Utah farms. PLOS Pathogens 17: e1009952 |
Eckstrand |
2021 |
|
PMID 33467732
|
2021 |
Everett |
2021 |
|
PMID 34010360
In OmniVira
|
SARS-CoV-2 infection, neuropathogenesis and transmission among deer mice: Implications for spillback to New World rodents. |
Fagre |
2021 |
|
PMID 33803455
In OmniVira
|
Experimental Inoculation of Young Calves with SARS-CoV-2. |
Falkenberg |
2021 |
|
-
|
2021. Chimpanzees and Orangutans at Dehiwala Zoo test COVID positive. Newsfirst.lk (18 July 2021). www.newsfirst.lk/2021/07/18/chimpanzees-orangutans-at-dehiwala-zoo-test-covid-positive |
Farzan |
2021 |
|
PMID 34578266
|
2021 |
Fernández-Bellon |
2021 |
|
PMID 34784766
In OmniVira
|
Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2. |
Fischhoff |
2021 |
|
PMID 33089771
|
2020 |
Freuling |
2020 |
|
PMID 35202302
|
2022. First evidence of natural SARS-CoV-2 infection in domestic rabbits. Veterinary Sciences 9: 49 |
Fritz |
2022 |
|
PMID 33028154
|
2020 |
Gaudreault |
2020 |
|
PMID 33704016
|
2021 |
Gaudreault |
2021 |
|
-
|
2021. Captive gorillas test positive for coronavirus |
Gibbons |
2021 |
|
PMID 33801548
In OmniVira
|
SARS-CoV-2 Seroprevalence in Household Domestic Ferrets (<i>Mustela putorius furo</i>). |
Giner |
2021 |
|
PMID 34359182
|
2021. SARS-CoV-2 clinical outcome in domestic and wild cats: A systematic review. Animals 11: 2056 |
Giraldo-Ramirez |
2056 |
|
PMID 32315124
|
2020. Is COVID-19 the first pandemic that evolves into a panzootic? Veterinaria Italiana 56: 7–8 |
Gollakner |
2020 |
|
PMID 34152974
|
2021. Natural SARS-CoV-2 infection in kept Ferrets, Spain. Emerging Infectious Diseases 27: 1994–1996 |
Gortazar |
1996 |
|
PMID 34127676
In OmniVira
|
SARS-CoV-2 infection and transmission in the North American deer mouse. |
Griffin |
2021 |
|
PMID 33230363
|
2020. Risk of human-to-wildlife transmission of SARS-CoV-2. Mammal Review 51: 272–292 |
Gryseels |
2020 |
|
PMID 32402157
|
2020 |
Halfmann |
2020 |
|
PMID 33295095
|
2020. Experimental challenge of a North American bat species, big brown bat ( Eptesicus fuscus ), with SARS-CoV-2. Transboundary and Emerging Diseases 68: 3443–3452 |
Hall |
2020 |
|
PMID 34069453
In OmniVira
|
SARS-CoV-2 Infections and Viral Isolations among Serially Tested Cats and Dogs in Households with Infected Owners in Texas, USA. |
Hamer |
2021 |
|
PMID 33207152
|
2021 |
Hammer |
2021 |
|
PMID 15141377
|
2004 |
Hamming |
2004 |
|
PMID 32946524
|
2020 |
Hartman |
2020 |
|
PMID 33106507
|
2020 |
Hendy |
2020 |
|
PMID 33091230
|
2021. Animals and SARS-CoV-2: Species susceptibility and viral transmission in experimental and natural conditions, and the potential implications for community transmission. Transboundary and Emerging Diseases 68: 1850–1867 |
Hobbs |
2021 |
|
PMID 32142651
|
2020 |
Hoffmann |
2020 |
|
PMID 33890314
In OmniVira
|
Detection of SARS-CoV-2 in respiratory samples from cats in the UK associated with human-to-cat transmission. |
Hosie |
2021 |
|
PMID 18448662
|
2008. The discovery of angiotensin-converting enzyme 2 and its role in acute lung injury in mice. Experimental Physiology 93: 543–548 |
Imai |
2008 |
|
PMID 32571934
|
2020 |
Imai |
2020 |
|
PMID 33412411
|
2021. Neutralizing antibodydependent and -independent immune responses against SARS-CoV-2 in cynomolgus macaques. Virology 554: 97–105 |
Ishigaki |
2021 |
|
PMID 32259477
|
2020 |
Kim |
2020 |
|
PMID 33407005
|
2021 |
Kim |
2021 |
|
PMID 33802899
In OmniVira
|
Detection and Genome Sequencing of SARS-CoV-2 in a Domestic Cat with Respiratory Signs in Switzerland. |
Klaus |
2021 |
|
PMID 33806922
In OmniVira
|
SARS-CoV-2 Infection and Antibody Response in a Symptomatic Cat from Italy with Intestinal B-Cell Lymphoma. |
Klaus |
2021 |
|
PMID 32745172
|
2020. Transient lymphopenia and interstitial pneumonia with endotheliitis in SARS-CoV-2-infected macaques. Journal of Infectious Diseases 222: 1596–1600 |
Koo |
2020 |
|
PMID 33227234
|
2021. SARS-CoV-2 and the human-animal interface: Outbreaks on mink farms |
Koopmans |
2021 |
|
PMID 35078920
In OmniVira
|
Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer. |
Kuchipudi |
2022 |
|
PMID 33712573
|
2021. SARS-CoV and SARS-CoV-2 are transmitted through the air between ferrets over more than one meter distance |
Kutter |
2021 |
|
PMID 33020502
In OmniVira
|
SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals. |
Lam |
2020 |
|
PMID 33541485
|
2021 |
Larsen |
2020 |
|
PMID 34789872
In OmniVira
|
Independent infections of porcine deltacoronavirus among Haitian children. |
Lednicky |
2021 |
|
PMID 34718467
|
2022. Isolation of a novel recombinant canine coronavirus from a visitor to Haiti: Further evidence of transmission of coronaviruses of zoonotic origin to humans. Clinical Infectious Diseases 75: e1184–e1187 |
Lednicky |
2022 |
|
PMID 35821014
In OmniVira
|
Broader-species receptor binding and structural bases of Omicron SARS-CoV-2 to both mouse and palm-civet ACE2s. |
Li |
2022 |
|
PMID 35657469
In OmniVira
|
Reverse spillover of SARS-CoV-2 from human to wild animals. |
Li |
2022 |
|
PMID 32387617
|
2020. COVID-19: The first documented coronavirus pandemic in history. Biomedical Journal 43: 328–333 |
Liu |
2020 |
|
PMID 32814760
|
2020 |
Lu |
2020 |
|
PMID 34815406
In OmniVira
|
Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands. |
Lu |
2021 |
|
PMID 35271704
|
2022a |
Magalis |
- |
|
PMID 35307848
|
2022b |
Magalis |
- |
|
PMID 35992994
In OmniVira
|
Detection of SARS-CoV-2 in a free ranging leopard (<i>Panthera pardus fusca</i>) in India. |
Mahajan |
2022 |
|
PMID 32909703
|
2020. Could Mustelids spur COVID-19 into a panzootic? Veterinaria Italiana 56: 65–66 |
Manes |
2020 |
|
PMID 35312736
In OmniVira
|
From Deer-to-Deer: SARS-CoV-2 is efficiently transmitted and presents broad tissue tropism and replication sites in white-tailed deer. |
Martins |
2022 |
|
PMID 33051368
In OmniVira
|
From People to <i>Panthera</i>: Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo. |
McAloose |
2020 |
|
PMID 33003988
In OmniVira
|
Susceptibility of swine cells and domestic pigs to SARS-CoV-2. |
Meekins |
2020 |
|
PMID 34696423
|
2021. Natural and experimental SARS-CoV-2 infection in domestic and wild animals |
Meekins |
1993 |
|
PMID 32679081
|
2020 |
Meredith |
2020 |
|
PMID 23418397
|
2013 |
Minh |
2013 |
|
PMID 34545805
|
2021 |
Mishra |
2021 |
|
PMID 34578354
|
2021. SARS-CoV-2 Delta variant pathogenesis and host response in Syrian Hamsters |
Mohandas |
2021 |
|
PMID 32663073
|
2020 |
Molenaar |
2020 |
|
PMID 33612147
|
2021 |
Monchatre-Leroy |
2021 |
|
PMID 32814953
|
2021. ViralMSA: Massively scalable reference-guided multiple sequence alignment of viral genomes |
Moshiri |
2021 |
|
PMID 32396922
|
2020 |
Munster |
2020 |
|
PMID 33356979
|
2021 |
Mykytyn |
2021 |
|
PMID 32525853
|
2020 |
Newman |
2020 |
|
PMID 25371430
|
2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32: 268–274 |
Nguyen |
2015 |
|
PMID 37018380
In OmniVira
|
Cryo-EM structures and binding of mouse and human ACE2 to SARS-CoV-2 variants of concern indicate that mutations enabling immune escape could expand host range. |
Ni |
2023 |
|
-
|
2020 |
[NIH] National Institutes of Health |
2020 |
|
PMID 32881980
|
2020 |
Olival |
2020 |
|
PMID 32553059
|
2020 |
Oreshkova |
2020 |
|
PMID 32698441
|
2020. Age-dependent progression of SARS-CoV-2 infection in Syrian hamsters |
Osterrieder |
2020 |
|
PMID 35148677
|
2022. Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences. BMC Genomics 23: 121 |
O'Toole Á |
2022 |
|
PMID 33172935
In OmniVira
|
Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans. |
Oude Munnink |
2021 |
|
PMID 33672421
|
2021 |
Pagani |
2021 |
|
PMID 33692203
In OmniVira
|
Susceptibility of white-tailed deer (<i>Odocoileus virginianus</i>) to SARS-CoV-2. |
Palmer |
2021 |
|
PMID 14734327
|
2004. APE: Analyses of Phylogenetics and Evolution in R language |
Paradis |
2004 |
|
PMID 33350904
|
2021. Susceptibility of domestic swine to experimental infection with Severe Acute Respiratory Syndrome coronavirus 2. Emerging Infectious Diseases 27: 104–112 |
Pickering |
2021 |
|
PMID 36357713
In OmniVira
|
Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission. |
Pickering |
2022 |
|
PMID 28555073
|
2017. Pathways to zoonotic spillover |
Plowright |
2017 |
|
PMID 35830965
|
2022. Susceptibility of wild canids to SARS-CoV-2. Emerging Infectious Diseases 28: 1852–1855 |
Porter |
2022 |
|
PMID 36751428
In OmniVira
|
Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink. |
Porter |
2023 |
|
-
|
2022 |
QGIS |
2022 |
|
PMID 36121159
|
2023. SARS-CoV-2 and natural infection in animals. Journal of Medical Virology 95: e28147 |
Qiu |
2023 |
|
PMID 34748603
In OmniVira
|
Mutation Y453F in the spike protein of SARS-CoV-2 enhances interaction with the mink ACE2 receptor for host adaption. |
Ren |
2021 |
|
-
|
2012. phytools: An R package for phylogenetic comparative biology (and other things). Methods in Ecology and Evolution /British Ecological Society 3: 217–223 |
Revell LJ. 2012. phytools: An R package |
2012 |
|
PMID 32641684
|
2020. SARS-CoV-2 is transmitted via contact and via the air between ferrets |
Richard |
2020 |
|
PMID 35994656
|
2022. Wildlife susceptibility to infectious diseases at global scales. Proceedings of the National Academy of Sciences 119: e2122851119 |
Robles-Fernández ÁL |
2022 |
|
PMID 33270653
In OmniVira
|
Insights on cross-species transmission of SARS-CoV-2 from structural modeling. |
Rodrigues |
2020 |
|
PMID 33251966
|
2020. Defining the Syrian hamster as a highly susceptible preclinical model for SARS-CoV-2 infection. Emerging Microbes and Infections 9: 2673–2684 |
Rosenke |
2020 |
|
PMID 32810370
|
2021. Detection of SARS-CoV-2 in pets living with COVID-19 owners diagnosed during the COVID-19 lockdown in Spain: A case of an asymptomatic cat with SARS-CoV-2 in Europe. Transboundary and Emerging Diseases 68: 973–976 |
Ruiz-Arrondo |
2021 |
|
PMID 33398055
|
2021 |
Ryan |
2021 |
|
PMID 29340210
|
2018. TreeTime: Maximum-likelihood phylodynamic analysis |
Sagulenko |
2018 |
|
PMID 32500944
|
2020 |
Sailleau |
2020 |
|
PMID 33627662
|
2021 |
Salguero FJ.et al |
2021 |
|
PMID 32838346
In OmniVira
|
SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study. |
Schlottau |
2020 |
|
PMID 32948692
|
2020 |
Segales |
2020 |
|
PMID 33574037
|
2021 |
Selvaraj |
2021 |
|
PMID 32636454
|
2020 |
Shan |
2020 |
|
PMID 32269068
|
2020 |
Shi |
2020 |
|
PMID 34676095
|
2021 |
Shuai |
2021 |
|
PMID 32408338
|
2020 |
Sia |
2020 |
|
PMID 33340034
|
2021 |
Singh |
2021 |
|
PMID 33998182
|
2021. Northern pig-tailed macaques ( Macaca leonina ) infected with SARS-CoV-2 show rapid viral clearance and persistent immune response. Zoological Research 42: 350–353 |
Song |
2021 |
|
PMID 32772513
|
2020a |
Song |
- |
|
PMID 33510731
|
2020b |
Song |
- |
|
PMID 33392409
|
Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2 |
Sun |
- |
|
PMID 34580297
In OmniVira
|
Characterization and structural basis of a lethal mouse-adapted SARS-CoV-2. |
Sun |
2021 |
|
PMID 33374797
In OmniVira
|
Multiple Recombination Events and Strong Purifying Selection at the Origin of SARS-CoV-2 Spike Glycoprotein Increased Correlated Dynamic Movements. |
Tagliamonte |
2020 |
|
PMID 34471930
|
2022 |
Tagliamonte |
2060 |
|
PMID 35172323
In OmniVira
|
Bat coronaviruses related to SARS-CoV-2 and infectious for human cells. |
Temmam |
2022 |
|
PMID 31522710
|
2019. Structural insights into coronavirus entry. Advances in Virus Research 105: 93–116 |
Tortorici |
2019 |
|
PMID 33271063
|
2020. The Roborovski Dwarf Hamster is a highly susceptible model for a rapid and fatal course of SARS-CoV-2 infection |
Trimpert |
2020 |
|
PMID 37632004
In OmniVira
|
Increase in SARS-CoV-2 Seroprevalence in UK Domestic Felids Despite Weak Immunogenicity of Post-Omicron Variants. |
Tyson |
2023 |
|
PMID 33754987
|
2020. Experimental SARS-CoV-2 infection of bank voles-general susceptibility but lack of direct transmission. Emerging and Infectious Diseases 27: 1193–1195 |
Ulrich |
2020 |
|
PMID 31800571
|
2019. Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation. PLOS Biology 17: e3000494 |
Upham |
2019 |
|
-
|
2021a |
[USDA] US Department of Agriculture . 20 |
2021 |
|
-
|
2021b |
[USDA] US Department of Agriculture . 20 |
2021 |
|
-
|
2021c |
[USDA] US Department of Agriculture . 20 |
2021 |
|
-
|
2021d |
[USDA] US Department of Agriculture . 20 |
2021 |
|
-
|
2021e |
[USDA] US Department of Agriculture . 20 |
2021 |
|
-
|
2021f |
[USDA] US Department of Agriculture . 20 |
2021 |
|
-
|
2023 |
[USDA] US Department of Agriculture |
2023 |
|
PMID 33007154
|
2021 |
Vergara-Alert |
2021 |
|
PMID 34013321
|
2022. Novel canine coronavirus isolated from a hospitalized patient with pneumonia in East Malaysia. Clinical Infectious Diseases 74: 446–454 |
Vlasova |
2022 |
|
PMID 23910545
|
2013. Urbanization and geographic expansion of zoonotic arboviral diseases: Mechanisms and potential strategies for prevention. Trends in Microbiology 21: 360–363 |
Weaver |
2013 |
|
PMID 34954396
In OmniVira
|
Evidence for a mouse origin of the SARS-CoV-2 Omicron variant. |
Wei |
2021 |
|
PMID 31047808
|
2019. Host specificity in variable environments. Trends in Parasitology 35: 452–465 |
Wells |
2019 |
|
-
|
2021 |
[WHO] Word Health Organization |
2021 |
|
PMID 26978244
|
2016 |
Wilkinson |
2016 |
|
-
|
2020 |
[WOAH] World Organization for Animal Hea |
2020 |
|
-
|
2022a |
[WOAH] World Organization for Animal Hea |
2022 |
|
-
|
2022b |
[WOAH] World Organization for Animal Hea |
2022 |
|
-
|
2022c |
[WOAH] World Organization for Animal Hea |
2022 |
|
PMID 33235385
|
2021 |
Woolsey |
2021 |
|
-
|
2021 |
Xinhua |
2021 |
|
PMID 32623546
|
2020. Expression of ACE2 in human neurons supports the neuro-invasive potential of COVID-19 virus. Cellular and Molecular Neurobiology 42: 305–309 |
Xu |
2020 |
|
PMID 32701249
|
2020 |
Xu |
2020 |
|
PMID 32132184
In OmniVira
|
Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2. |
Yan |
2020 |
|
PMID 35279259
|
2022 |
Yen |
2022 |
|
PMID 32434945
|
2020 |
Yu |
2020 |
|
PMID 32994418
|
2020 |
Zhao |
2020 |
|
PMID 33180882
|
2020 |
Zheng |
2020 |
|
PMID 35093235
|
2022 |
Zhou |
2022 |