The panzootic potential of SARS-CoV-2.

Makenzie E Mabry1 Angela Fanelli2 Carla Mavian3 Alessio Lorusso4 Costanza Manes5 Pamela S Soltis1 Ilaria Capua6,7
Affiliations 7 institutions
  1. Florida Museum of Natural History, University of Florida, Gainesville, Florida, United States.
  2. Department of Veterinary Medicine, University of Bari, Valenzano, Bari, Italy.
  3. Emerging Pathogens Institute and with the Department of Pathology, University of Florida, Gainesville, Florida, United States.
  4. Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale, Teramo, Italy.
  5. Department of Wildlife Ecology and Conservation and with the One Health Center of Excellence, University of Florida, Gainesville, Florida, United States.
  6. One Health Center of Excellence, University of Florida, Gainesville, Florida, United States.
  7. School of International Advanced Studies, Johns Hopkins University, Bologna, Italy.

Abstract

Each year, SARS-CoV-2 is infecting an increasingly unprecedented number of species. In the present article, we combine mammalian phylogeny with the genetic characteristics of isolates found in mammals to elaborate on the host-range potential of SARS-CoV-2. Infections in nonhuman mammals mirror those of contemporary viral strains circulating in humans, although, in certain species, extensive viral circulation has led to unique genetic signatures. As in other recent studies, we found that the conservation of the ACE2 receptor cannot be considered the sole major determinant of susceptibility. However, we are able to identify major clades and families as candidates for increased surveillance. On the basis of our findings, we argue that the use of the term panzootic could be a more appropriate term than pandemic to describe the ongoing scenario. This term better captures the magnitude of the SARS-CoV-2 host range and would hopefully inspire inclusive policy actions, including systematic screenings, that could better support the management of this worldwide event.

Supporting text Virus Host Location
evolution 62 mammals 99 mutations 7 panzootic 2 SARS-CoV-2 550

Evidence records

2 total
Zoonotic Surveillance
1 records · 1 evidence types
Evidence type
1 records
OVE7646
Key finding

SARS-CoV-2 infections have been detected in multiple nonhuman mammal species and mirror contemporary strains circulating in humans.

Virus
Host
Location
Not specified
Supporting text

Each year, SARS-CoV-2 is infecting an increasingly unprecedented number of species. Infections in nonhuman mammals mirror those of contemporary viral strains circulating in humans.

Genomic Evolution
1 records · 1 evidence types
Evidence type
1 records
OVE7647
Key finding

Phylogenetic comparison of mammalian isolates indicates that, in certain nonhuman mammals, sustained SARS-CoV-2 circulation has produced unique genetic signatures distinct from viruses circulating in humans.

Virus
Host
Location
Not specified
Supporting text

Infections in nonhuman mammals mirror those of contemporary viral strains circulating in humans, although, in certain species, extensive viral circulation has led to unique genetic signatures.

Analysis methods
phylogenetic analysis | comparative genomic analysis of mammalian isolates