Literature detail

SARS-CoV-2 in animals: susceptibility of animal species, risk for animal and public health, monitoring, prevention and control.

EFSA Panel on Animal Health and Welfare (AHAW) Søren Saxmose Nielsen Julio Alvarez Dominique Joseph Bicout Paolo Calistri Elisabetta Canali Julian Ashley Drewe Bruno Garin-Bastuji José Luis Gonzales Rojas Christian Gortázar Mette Herskin Virginie Michel Miguel Ángel Miranda Chueca Barbara Padalino Paolo Pasquali Helen Clare Roberts Hans Spoolder Antonio Velarde Arvo Viltrop Christoph Winckler Cornelia Adlhoch Inmaculada Aznar Francesca Baldinelli Anette Boklund Alessandro Broglia Nora Gerhards Lina Mur Priyanka Nannapaneni Karl Ståhl
PMID 36860662 2023 EFSA J eng epublish
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Article

Publication summary

The epidemiological situation of SARS-CoV-2 in humans and animals is continually evolving. To date, animal species known to transmit SARS-CoV-2 are American mink, raccoon dog, cat, ferret, hamster, house mouse, Egyptian fruit bat, deer mouse and white-tailed deer. Among farmed animals, American mink have the highest likelihood to become infected from humans or animals and further transmit SARS-CoV-2. In the EU, 44 outbreaks were reported in 2021 in mink farms in seven MSs, while only six in 2022 in two MSs, thus representing a decreasing trend. The introduction of SARS-CoV-2 into mink farms is usually via infected humans; this can be controlled by systematically testing people entering farms and adequate biosecurity. The current most appropriate monitoring approach for mink is the outbreak confirmation based on suspicion, testing dead or clinically sick animals in case of increased mortality or positive farm personnel and the genomic surveillance of virus variants. The genomic analysis of SARS-CoV-2 showed mink-specific clusters with a potential to spill back into the human population. Among companion animals, cats, ferrets and hamsters are those at highest risk of SARS-CoV-2 infection, which most likely originates from an infected human, and which has no or very low impact on virus circulation in the human population. Among wild animals (including zoo animals), mostly carnivores, great apes and white-tailed deer have been reported to be naturally infected by SARS-CoV-2. In the EU, no cases of infected wildlife have been reported so far. Proper disposal of human waste is advised to reduce the risks of spill-over of SARS-CoV-2 to wildlife. Furthermore, contact with wildlife, especially if sick or dead, should be minimised. No specific monitoring for wildlife is recommended apart from testing hunter-harvested animals with clinical signs or found-dead. Bats should be monitored as a natural host of many coronaviruses.

control mink monitoring prevention public health SARS‐CoV‐2 wildlife

Structured evidence records

Evidence records

11 total
4 records
Extraction confidence 0.70
Key finding

Farmed American mink act as maintenance hosts for SARS-CoV-2 with multiple outbreaks in the EU, showing a decreasing trend between 2021 and 2022.

Virus
Location
Supporting text

Among farmed animals, American mink have the highest likelihood to become infected from humans or animals and further transmit SARS-CoV-2. In the EU, 44 outbreaks were reported in 2021 in mink farms in seven MSs, while only six in 2022 in two MSs, thus representing a decreasing trend.

Method
farm monitoring
Geographic raw
EU
Extraction confidence 0.70
Key finding

Wild carnivores, great apes and white-tailed deer have been naturally infected with SARS-CoV-2, but infected wildlife has not yet been reported in the EU.

Virus
Location
Supporting text

Among wild animals (including zoo animals), mostly carnivores, great apes and white-tailed deer have been reported to be naturally infected by SARS-CoV-2. In the EU, no cases of infected wildlife have been reported so far.

Method
wildlife monitoring
Geographic raw
EU
Extraction confidence 0.70
Key finding

Human–wildlife interfaces such as waste disposal and contact with dead or sick animals are ecological factors influencing SARS-CoV-2 spillover risk; recommended monitoring includes testing hunter-harvested or found-dead wildlife.

Virus
Host
Not specified
Location
Not specified
Supporting text

Proper disposal of human waste is advised to reduce the risks of spill-over of SARS-CoV-2 to wildlife. Furthermore, contact with wildlife, especially if sick or dead, should be minimised. No specific monitoring for wildlife is recommended apart from testing hunter-harvested animals with clinical signs or found-dead.

Method
wildlife testing
Sample type
hunter-harvested animals; found-dead animals
Extraction confidence 0.70
Key finding

Bats are identified as a natural host group for coronaviruses and recommended for continued monitoring.

Host
Location
Not specified
Supporting text

Bats should be monitored as a natural host of many coronaviruses.

Method
monitoring
2 records
Extraction confidence 0.95
Key finding

Human-to-animal spillback of SARS-CoV-2 into American mink farms in the EU was reported.

Virus
Location
Supporting text

The introduction of SARS-CoV-2 into mink farms is usually via infected humans; this can be controlled by systematically testing people entering farms and adequate biosecurity.

Method
testing; genomic surveillance
Study design
outbreak investigation
Transmission direction
human-to-animal
Geographic raw
EU
Extraction confidence 0.95
Key finding

Genomic clusters in mink indicate potential animal-to-human spillover of SARS-CoV-2 from mink to humans.

Virus
Location
Supporting text

The genomic analysis of SARS-CoV-2 showed mink-specific clusters with a potential to spill back into the human population.

Method
genomic analysis
Study design
genomic surveillance
Transmission direction
animal-to-human
Geographic raw
EU
2 records
Extraction confidence 0.90
Key finding

Genomic surveillance and outbreak monitoring of SARS-CoV-2 were conducted in farmed mink populations to detect virus variants and outbreaks.

Virus
Location
Supporting text

The current most appropriate monitoring approach for mink is the outbreak confirmation based on suspicion, testing dead or clinically sick animals in case of increased mortality or positive farm personnel and the genomic surveillance of virus variants.

Method
genomic surveillance; testing
Sample type
dead animals; clinically sick animals
Geographic raw
EU
Extraction confidence 0.85
Key finding

Wildlife surveillance for SARS-CoV-2 includes testing of hunter-harvested animals showing clinical signs or found dead.

Virus
Host
Not specified
Location
Supporting text

No specific monitoring for wildlife is recommended apart from testing hunter-harvested animals with clinical signs or found-dead.

Method
testing
Sample type
hunter-harvested animals; found-dead animals
Geographic raw
EU
1 records
Extraction confidence 0.90
Key finding

SARS-CoV-2 was reported to transmit between American mink, indicating animal-to-animal transmission among non-human hosts.

Virus
Location
Supporting text

Among farmed animals, American mink have the highest likelihood to become infected from humans or animals and further transmit SARS-CoV-2.

Study design
field surveillance
Transmission direction
animal-to-animal
Geographic raw
EU
1 records
Extraction confidence 0.75
Key finding

Genomic analysis revealed mink-specific SARS-CoV-2 clusters suggesting evolutionary divergence and potential human spillback.

Virus
Location
Not specified
Supporting text

The genomic analysis of SARS-CoV-2 showed mink-specific clusters with a potential to spill back into the human population.

Analysis methods
genomic analysis
1 records
Extraction confidence 0.80
Key finding

Forty-four SARS-CoV-2 outbreaks occurred in 2021 and six in 2022 in mink farms in the European Union, with infections typically introduced from humans to mink.

Virus
Location
Supporting text

In the EU, 44 outbreaks were reported in 2021 in mink farms in seven MSs, while only six in 2022 in two MSs, thus representing a decreasing trend. The introduction of SARS-CoV-2 into mink farms is usually via infected humans.

Transmission direction
human-to-animal
Geographic raw
EU
Outbreak setting
mink farms
Outbreak time
2021 and 2022
Outbreak scale
44 outbreaks in 2021 and 6 in 2022